Taverna 2

RShell does not work with input ports

Details

  • Type: Bug Bug
  • Status: Closed Closed
  • Priority: Critical Critical
  • Resolution: Fixed
  • Affects Version/s: 2.0.0
  • Fix Version/s: 2.1 RC 1
  • Component/s: Activity - RShell
  • Labels:
    None
  • Familiarity:
    Similar

Description

If an RShell activity has input ports, then an error is generated when it is run:

WARN 2009-03-04 14:03:51,010 (net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke:196) - Failed (INVOCATION) invoking net.sf.taverna.t2.activities.rshell.RshellActivity@466bb4 for job net.sf.taverna.t2.workflowmodel.processor.dispatch.events.DispatchJobEvent@389af9: Uncaught exception while invoking net.sf.taverna.t2.activities.rshell.RshellActivity@466bb4
java.lang.NullPointerException
at net.sf.taverna.t2.reference.impl.ReferenceServiceImpl.renderIdentifier(ReferenceServiceImpl.java:350)
at net.sf.taverna.t2.activities.rshell.RshellActivity$1.run(RshellActivity.java:117)
at java.lang.Thread.run(Thread.java:613)

Activity

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Alan Williams added a comment - 2009-10-22 16:34

This is similar to what was done for beanshells

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Alan Williams added a comment - 2009-10-22 16:34 This is similar to what was done for beanshells
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Hudson Daemon added a comment - 2009-11-03 16:48

Integrated in net.sf.taverna.t2.core.reference-core-extensions #383
New converters for Rshell as for

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Hudson Daemon added a comment - 2009-11-03 16:48 Integrated in net.sf.taverna.t2.core.reference-core-extensions #383 New converters for Rshell as for
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Hudson Daemon added a comment - 2009-11-03 16:50

Integrated in net.sf.taverna.t2.activities #703
Changes to do conversion as per

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Hudson Daemon added a comment - 2009-11-03 16:50 Integrated in net.sf.taverna.t2.activities #703 Changes to do conversion as per
Hide
Hudson Daemon added a comment - 2009-11-03 16:55
Show
Hudson Daemon added a comment - 2009-11-03 16:55 Integrated in net.sf.taverna.t2.ui-activities #1199
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Alan Williams added a comment - 2009-11-11 15:52

The whole conversion area seems convoluted.

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Alan Williams added a comment - 2009-11-11 15:52 The whole conversion area seems convoluted.

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Dates

  • Created:
    2009-03-04 14:12
    Updated:
    2009-11-11 15:52
    Resolved:
    2009-11-11 15:52

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