myGrid
  1. myGrid
  2. TAV-706

T2 XMLInputSplitterActivity problem

    Details

    • Type: Bug Bug
    • Status: Closed Closed
    • Priority: Major Major
    • Resolution: Not A Bug
    • Affects Version/s: 1.7
    • Fix Version/s: 1.7.1
    • Component/s: None
    • Labels:
      None

      Description

      When running the attached workflow (Phenotype to pubmed - provided by Paul, bear in mind it takes a while to load) with the input "african trypanosomiasis AND mouse" then the following error occurs:

      ERROR 2008-01-11 10:20:54,325 net.sf.taverna.t2.workflowmodel.processor.dispatch.impl.DispatchStackImpl (DispatchStackImpl$1:156) Error received in dispatch stack on owningProcess:facade0:dataflow2:parametersXML_eSearch, msg:Error in XMLInputSplitterActivity
      java.lang.IllegalStateException: Invalid directory/Users/sowen/Library/Application Support/Taverna-1.7.0/t2-datamanager/a34b5427-25a8-4039-b471-ffe69a6aa16a/blob/fa
      at net.sf.taverna.t2.cloudone.datamanager.file.FileBlobStore.parentDirectory(FileBlobStore.java:317)
      at net.sf.taverna.t2.cloudone.datamanager.file.FileBlobStore.fileById(FileBlobStore.java:285)
      at net.sf.taverna.t2.cloudone.datamanager.file.FileBlobStore.storeFromStream(FileBlobStore.java:245)
      at net.sf.taverna.t2.cloudone.datamanager.file.FileBlobStore.storeFromString(FileBlobStore.java:276)
      at net.sf.taverna.t2.cloudone.datamanager.DataFacade.register(DataFacade.java:260)
      at net.sf.taverna.t2.cloudone.datamanager.DataFacade.register(DataFacade.java:151)
      at net.sf.taverna.t2.cloudone.datamanager.DataFacade.register(DataFacade.java:103)
      at net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity$1.createOutputData(XMLInputSplitterActivity.java:81)
      at net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity$1.run(XMLInputSplitterActivity.java:69)
      at java.lang.Thread.run(Thread.java:613)

      i.e. there is a problem with the splitter at the top of the workflow.
      The workflow passes all health checks, and runs successfully with the T1 enactor.

      1. e_Search_Test.xml
        5 kB
        Stuart Owen
      2. pauls_workflow.xml
        10 kB
        Stuart Owen
      3. pauls_workflow-inner.xml
        5 kB
        Stuart Owen
      4. phenotype_to_pubmed.xml
        10 kB
        Stuart Owen

        Activity

          People

          • Assignee:
            Alan Williams
            Reporter:
            Stuart Owen
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            Dates

            • Created:
              Updated:
              Resolved: