Taverna Server

GETting a run's output port description returns a 500 error

Details

  • Type: Bug Bug
  • Status: Resolved Resolved
  • Priority: Blocker Blocker
  • Resolution: Cannot Reproduce
  • Affects Version/s: Taverna 2.3 Server Release 1
  • Fix Version/s: Taverna 2.3 Server Release 1
  • Component/s: Webapp
  • Labels:
    None

Description

This may simply be a bad build or a deployment error, but here is the error message anyway:

<h1>HTTP Status 500 - </h1><HR size="1" noshade="noshade"><p><b>type</b> Exception report</p><p><b>message</b> <u></u></p><p><b>description</b> <u>The server encountered an internal error () that prevented it from fulfilling this request.</u></p><p><b>exception</b> <pre>java.lang.RuntimeException: org.apache.cxf.interceptor.Fault: org/taverna/server/port_description/OutputDescription$OutputPort
	org.apache.cxf.interceptor.AbstractFaultChainInitiatorObserver.onMessage(AbstractFaultChainInitiatorObserver.java:102)
	org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:315)
	org.apache.cxf.transport.ChainInitiationObserver.onMessage(ChainInitiationObserver.java:113)
	org.apache.cxf.transport.servlet.ServletDestination.invoke(ServletDestination.java:105)
	org.apache.cxf.transport.servlet.ServletController.invokeDestination(ServletController.java:464)
	org.apache.cxf.transport.servlet.ServletController.invoke(ServletController.java:149)
	org.apache.cxf.transport.servlet.AbstractCXFServlet.invoke(AbstractCXFServlet.java:148)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.handleRequest(AbstractHTTPServlet.java:179)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.doGet(AbstractHTTPServlet.java:108)
	javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.service(AbstractHTTPServlet.java:159)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:97)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:100)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:78)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:35)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.channel.ChannelProcessingFilter.doFilter(ChannelProcessingFilter.java:109)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)
	org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
	org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
</pre></p><p><b>root cause</b> <pre>org.apache.cxf.interceptor.Fault: org/taverna/server/port_description/OutputDescription$OutputPort
	org.apache.cxf.service.invoker.AbstractInvoker.createFault(AbstractInvoker.java:155)
	org.apache.cxf.service.invoker.AbstractInvoker.invoke(AbstractInvoker.java:121)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:164)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:242)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:91)
	org.apache.cxf.interceptor.ServiceInvokerInterceptor$1.run(ServiceInvokerInterceptor.java:58)
	java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	java.util.concurrent.FutureTask.run(Unknown Source)
	org.apache.cxf.workqueue.SynchronousExecutor.execute(SynchronousExecutor.java:37)
	org.apache.cxf.interceptor.ServiceInvokerInterceptor.handleMessage(ServiceInvokerInterceptor.java:106)
	org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:255)
	org.apache.cxf.transport.ChainInitiationObserver.onMessage(ChainInitiationObserver.java:113)
	org.apache.cxf.transport.servlet.ServletDestination.invoke(ServletDestination.java:105)
	org.apache.cxf.transport.servlet.ServletController.invokeDestination(ServletController.java:464)
	org.apache.cxf.transport.servlet.ServletController.invoke(ServletController.java:149)
	org.apache.cxf.transport.servlet.AbstractCXFServlet.invoke(AbstractCXFServlet.java:148)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.handleRequest(AbstractHTTPServlet.java:179)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.doGet(AbstractHTTPServlet.java:108)
	javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.service(AbstractHTTPServlet.java:159)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:97)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:100)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:78)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:35)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.channel.ChannelProcessingFilter.doFilter(ChannelProcessingFilter.java:109)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)
	org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
	org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
</pre></p><p><b>root cause</b> <pre>java.lang.NoClassDefFoundError: org/taverna/server/port_description/OutputDescription$OutputPort
	org.taverna.server.master.ContentsDescriptorBuilder.constructPorts(ContentsDescriptorBuilder.java:166)
	org.taverna.server.master.ContentsDescriptorBuilder.makeOutputDescriptor(ContentsDescriptorBuilder.java:319)
	org.taverna.server.master.RunREST.getOutputDescription(RunREST.java:199)
	org.taverna.server.master.RunREST$$FastClassByCGLIB$$3c53bbcf.invoke(&lt;generated&gt;)
	net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:191)
	org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:688)
	org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	org.springframework.aop.aspectj.AspectJAfterThrowingAdvice.invoke(AspectJAfterThrowingAdvice.java:55)
	org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	org.springframework.aop.framework.adapter.MethodBeforeAdviceInterceptor.invoke(MethodBeforeAdviceInterceptor.java:50)
	org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:161)
	org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:89)
	org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:621)
	org.taverna.server.master.RunREST$$EnhancerByCGLIB$$2bd61335.getOutputDescription(&lt;generated&gt;)
	sun.reflect.GeneratedMethodAccessor160.invoke(Unknown Source)
	sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	java.lang.reflect.Method.invoke(Unknown Source)
	org.apache.cxf.service.invoker.AbstractInvoker.performInvocation(AbstractInvoker.java:173)
	org.apache.cxf.service.invoker.AbstractInvoker.invoke(AbstractInvoker.java:89)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:164)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:242)
	org.apache.cxf.jaxrs.JAXRSInvoker.invoke(JAXRSInvoker.java:91)
	org.apache.cxf.interceptor.ServiceInvokerInterceptor$1.run(ServiceInvokerInterceptor.java:58)
	java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	java.util.concurrent.FutureTask.run(Unknown Source)
	org.apache.cxf.workqueue.SynchronousExecutor.execute(SynchronousExecutor.java:37)
	org.apache.cxf.interceptor.ServiceInvokerInterceptor.handleMessage(ServiceInvokerInterceptor.java:106)
	org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:255)
	org.apache.cxf.transport.ChainInitiationObserver.onMessage(ChainInitiationObserver.java:113)
	org.apache.cxf.transport.servlet.ServletDestination.invoke(ServletDestination.java:105)
	org.apache.cxf.transport.servlet.ServletController.invokeDestination(ServletController.java:464)
	org.apache.cxf.transport.servlet.ServletController.invoke(ServletController.java:149)
	org.apache.cxf.transport.servlet.AbstractCXFServlet.invoke(AbstractCXFServlet.java:148)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.handleRequest(AbstractHTTPServlet.java:179)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.doGet(AbstractHTTPServlet.java:108)
	javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
	org.apache.cxf.transport.servlet.AbstractHTTPServlet.service(AbstractHTTPServlet.java:159)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:343)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109)
	org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:97)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:100)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:78)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:35)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:177)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:79)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.access.channel.ChannelProcessingFilter.doFilter(ChannelProcessingFilter.java:109)
	org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:355)
	org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:149)
	org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
	org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
</pre></p><p><b>note</b> <u>The full stack trace of the root cause is available in the Apache Tomcat/6.0.26 logs.</u></p><HR size="1" noshade="noshade"><h3>Apache Tomcat/6.0.26</h3>

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Donal K Fellows added a comment - 2011-09-21 11:41

I have no idea what's going on here. Maybe an incomplete build?

I've put a complete new build up on eric just in case that's it. Feel free to try...

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Donal K Fellows added a comment - 2011-09-21 11:41 I have no idea what's going on here. Maybe an incomplete build? I've put a complete new build up on eric just in case that's it. Feel free to try...

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Dates

  • Created:
    2011-09-02 16:43
    Updated:
    2011-09-21 11:41
    Resolved:
    2011-09-21 11:41
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