Release Notes - myGrid - Version 1.5 - HTML format

Bug

  • [TAV-68] - "Instructions" for input parameters when running workflow
  • [TAV-112] - Out of memory error on repeated runs
  • [TAV-116] - Save to Excel with Empty list items
  • [TAV-126] - Biomart query editor displays displays progress bar forever when a dataset is missing.
  • [TAV-127] - Thread leak of ScuflModel.NotifyThread
  • [TAV-141] - Dependency on phoebus LSID service hangs Taverna
  • [TAV-143] - XScuflView creation requires scuflModel.removeListener()
  • [TAV-151] - notifyThread.interrupt() considered harmful
  • [TAV-156] - EnactorInvocation.detachFromModel() might destroy workflow instances too soon.
  • [TAV-160] - CollectionConstructionEvent has workflowInstance with no id.
  • [TAV-165] - Several workflow instances created
  • [TAV-204] - Comments in SPI file not recognised
  • [TAV-207] - New Workflow makes Scavenger Tree go wierd
  • [TAV-208] - Raven ignores exclusions
  • [TAV-209] - Can't Edit nested workflows
  • [TAV-213] - can't run a workflow
  • [TAV-214] - can't load a workflow with an xml splitter
  • [TAV-215] - Workflow title not updated in File menu
  • [TAV-216] - RendererSPI: Can't see result values
  • [TAV-217] - Opening workflow fails to find XMLSpitter classes
  • [TAV-219] - Can't run service from "Invoke" in Service panel
  • [TAV-220] - No 'set boring' in the menu, and also various class not found exceptions related to this
  • [TAV-223] - Raven logging
  • [TAV-224] - JDom dependency problem when using biomoby
  • [TAV-225] - Port the provenance browser onto Taverna 1.5.
  • [TAV-227] - Several instance containers --> Several runs
  • [TAV-228] - Download raven.properties from the network
  • [TAV-230] - Unable to drag processor onto AME
  • [TAV-231] - Can't add processor as alternative
  • [TAV-234] - Browser does not display process runs
  • [TAV-239] - Reload/Rerun from LogBook browser fails
  • [TAV-258] - Biomart query editor doesn't update port changes in the model explorer
  • [TAV-260] - Focus lost when changing workflow title
  • [TAV-264] - Processors not generating ScuflModelEvents when ports change
  • [TAV-266] - Errors storing profile when first run.
  • [TAV-267] - Graphviz not found when running in windows.
  • [TAV-268] - AdvancedModelExplorer doesn't redraw when a new workflow is selected
  • [TAV-272] - Workflow Diagram resets when switching perspectives
  • [TAV-283] - LogBook ui fails to start if the provenance.properties file is missing.
  • [TAV-287] - Workflow diagram don't refresh on resize
  • [TAV-314] - Switching from Design perspective does not do detachFromModel().
  • [TAV-315] - No scrollbar on AME workflow description
  • [TAV-321] - Open workflow location does not do Offline-handling
  • [TAV-327] - Update readme.html
  • [TAV-328] - Inconsistent data names for LogBook.
  • [TAV-330] - Editing custom perspectives doesn't work
  • [TAV-331] - Can't add processor from Feta in windows
  • [TAV-334] - Closing a previous run tab while a workflow is running freezes taverna.

Improvement

  • [TAV-92] - BioMOBY/mygrid ontology convergence
  • [TAV-161] - Button labels not clickable
  • [TAV-222] - Have the Enactor Invocation window appear in a tab when running a workflow
  • [TAV-242] - Results tabs should show a unique identifier to distinguish different runs.
  • [TAV-245] - The Run/Enactment winodw should show the current workflow image as you switch into it.
  • [TAV-247] - Untitled workflow tabs should show a unique identifier to distinguish different workflows.
  • [TAV-249] - The title of the "Run" perspective is misleading
  • [TAV-250] - Create an advanced feature menu to prevent a casual user falling into the perspective editor by accident.
  • [TAV-252] - Improve the management of input parameters
  • [TAV-255] - Execution perspective needs to be more intuitive when a workflow has NO inputs.
  • [TAV-262] - Diagram should be showed in Run perspective.
  • [TAV-263] - Create a model manager
  • [TAV-276] - need a method for plugins to be added in to a Taverna installation
  • [TAV-285] - Deal better with absence of LogBook configuration.

New Feature

  • [TAV-16] - Modifications to the Taverna GUI
  • [TAV-20] - Providing access to R libraries
  • [TAV-42] - Display workflow file name if no title
  • [TAV-203] - hide the edit mode in the gui
  • [TAV-233] - have to have a manner to deselect plugins
  • [TAV-265] - Display model title in the advanced model explorer

Refinement

  • [TAV-282] - Move Load and Save actions to the File menu
  • [TAV-286] - Update splashscreen artwork
  • [TAV-292] - Default L & F
  • [TAV-293] - Perspective & SPI unfamiliar terminology
  • [TAV-294] - Blank workflow on startup, and opening a new one creates a new workflow.
  • [TAV-297] - Save changes on exit
  • [TAV-298] - Exit menu action
  • [TAV-299] - Workflows menu should be seperate from File menu
  • [TAV-301] - Avoid empty "Results" perspective
  • [TAV-305] - Store splitpane proportions of non-custom perspective if a user changes them
  • [TAV-312] - Examples need to be updated for 1.5
  • [TAV-324] - Visually indicate new updates are available
  • [TAV-325] - Help menu and about box
  • [TAV-326] - Multiple Non-optional plugin sites

Task

  • [TAV-181] - Integrate Raven/Zaria with Taverna
  • [TAV-194] - Add a WS-Security workaround solution into the 1.5 release.
  • [TAV-195] - Integrate FETA into the 1.5 release
  • [TAV-196] - Integrate Provenance into the 1.5 release
  • [TAV-197] - Startup script required for 1.5
  • [TAV-198] - Ability to run from the command line needed for 1.5
  • [TAV-256] - Remember pane splitting between switching perspectives
  • [TAV-308] - Check InteractionService

Sub-task

  • [TAV-182] - Load/save/rename zaria perspectives
  • [TAV-183] - Raven-enabled MyGridConfiguration properties load/save
  • [TAV-184] - Refactor out bootstrap class to a launcher module
  • [TAV-185] - Remove hardcoded bootstrap locations/dependencies
  • [TAV-186] - Get rid of transitive dependencies for Taverna modules with Raven
  • [TAV-187] - Compose default zaria perspectives for Taverna
  • [TAV-188] - Profile/list of artifacts to install/run on bootstrap
  • [TAV-190] - SPI registry filtering
  • [TAV-210] - Store local copy of splashscreen
  • [TAV-211] - Handle Updates
  • [TAV-281] - Update to new API and add a perspective and fix dependency issues

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