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Attending

Niall (minuting), Rafa, Milo, Finn

Agenda

 

  • NETTAB TrCG Meeting washup
  • Updates on TeSS
  • Next weeks all hands meeting
  • AOB

NETTAB TrCG Meeting

  • Did presentation on accomplishments and roadmap of TeSS. Plus brief schema.org overview and curator tools demo. 

  • Change URL to tess.elixir-europe.org - instead of elixir-uk - in progress. Emailed the Hub and got Caroles approval.

  • Encouraged TrCG to be curators but probably should have pressed a lot harder. Will be sending an e-mail and hosting a webinar to outline the responsibilities and duties of training co-ordinators at some point soon; rather than it being such a voluntary activity. The spreadsheet to sign up can be found here https://docs.google.com/spreadsheets/d/1HhVdkXz334l8_yjKmHg3k7vtPHrnUESA9ETYzAqZIkA/edit#gid=0

    • Rafa: The hub will support this decision. Will also add Maria who is the events organizer for ELIXIR. She would make a good curator.

  • Software demo was a TOTAL wash out. Small desk in the back corner of a loud coffee room. Never really got to display Training workflows.

  • Bjorn registry of galaxy - Creating YAML compliant metadata with minimal Bioschemas fields. Get this interpreted into json-ld down the line. 

Updates on TeSS

Content Providers

GOBLET metadata standard will be brought inline with bioschemas. Just to note as scraper may change.

Completed Cambridge scraper. Provided nice API for us to use

Rafa: Have you heard of Hypothes.is? - annotate web pages. Chrome extension, highlight parts of the page that contain certain information. View the annotations as an RSS stream. Supposed to be an automated annotation feature?

Working on filtering CSC events by 'tess' tag. Not very consistent so difficult 

EBI Train online emailed today to say beginning schema.org integration work soon

TeSS code

Finn busy Refactoring scrapers and rewriting RDFa parser. Ran into lots of issues due to malformed RDF. 

Milo need to update server and restart to patch recently found security flaw in ubuntu. Created a fix for tooltip issue, will put on the test server.

All hands next week

Presentations at ELIXIR-UK next week - one on Bioschemas integration with TeSS, one on TeSS.

Rafa: Could Finn write a slide about RDFa and how different implementations vary

Footnote

You can use the hypothes.is Chrome extension to annotate a training event or material. Then you just go to the https://hypothes.is/stream.rss?uri=<website_address>  and parse the annotations. 

e.g., here's one I did earlier https://hypothes.is/stream.rss?uri=http://gtpb.igc.gulbenkian.pt/bicourses/index.html

Install Chrome extension, go to http://gtpb.igc.gulbenkian.pt/bicourses/index.html then parse RSS

Example of hypothes.is RSS
<?xml version="1.0"?>
<rss version="2.0"
     xmlns:atom="http://www.w3.org/2005/Atom"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
  <channel>
    <title>Hypothesis Stream</title>
    <link>https://hypothes.is/stream</link>
    <atom:link href="https://hypothes.is/stream.rss" rel="self" type="application/rss+xml" />
    <description>The Web. Annotated</description>
    <pubDate>Thu, 03 Nov 2016 15:32:46 UTC</pubDate>
    <docs>http://blogs.law.harvard.edu/tech/rss</docs>
    <item>
       <title>GTPB Home</title>
       <description>&lt;blockquote&gt;Fernanda Diamantino&lt;/blockquote&gt;Author name</description>
       <pubDate>Thu, 03 Nov 2016 15:32:46 +0000</pubDate>
       <guid isPermaLink="true">tag:hypothes.is,2015-09:xSNaiqHaEeae5bc_sSWGlw</guid>
       <link>https://hypothes.is/a/xSNaiqHaEeae5bc_sSWGlw</link>
       <dc:creator><![CDATA[njallbeard]]></dc:creator>
    </item>
    <item>
       <title>GTPB Home</title>
       <description>&lt;blockquote&gt;Cristina Rocha&lt;/blockquote&gt;Author name</description>
       <pubDate>Thu, 03 Nov 2016 15:32:27 +0000</pubDate>
       <guid isPermaLink="true">tag:hypothes.is,2015-09:udCoQKHaEeaoeo83ZL8org</guid>
       <link>https://hypothes.is/a/udCoQKHaEeaoeo83ZL8org</link>
       <dc:creator><![CDATA[njallbeard]]></dc:creator>
    </item>
    <item>
       <title>GTPB Home</title>
       <description>&lt;blockquote&gt;IBSTATB16Intoductory Biostatistics for Biologists
&lt;/blockquote&gt;Event name</description>
       <pubDate>Thu, 03 Nov 2016 15:32:08 +0000</pubDate>
       <guid isPermaLink="true">tag:hypothes.is,2015-09:rrBg1qHaEeakM381vj5tNQ</guid>
       <link>https://hypothes.is/a/rrBg1qHaEeakM381vj5tNQ</link>
       <dc:creator><![CDATA[njallbeard]]></dc:creator>
    </item>
    <item>
       <title>GTPB Home</title>
       <description>&lt;blockquote&gt;Nov 14 - Nov 18&lt;/blockquote&gt;start date
end date
</description>
       <pubDate>Thu, 03 Nov 2016 15:22:22 +0000</pubDate>
       <guid isPermaLink="true">tag:hypothes.is,2015-09:UTg6kqHZEeaaOP9fLY7rHA</guid>
       <link>https://hypothes.is/a/UTg6kqHZEeaaOP9fLY7rHA</link>
       <dc:creator><![CDATA[njallbeard]]></dc:creator>
    </item>
  </channel>
</rss>
 
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