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Tests repeated 2014-10-28  With the same results.

Testing of Command line using workflow URIs

Working workflows (Windows 8)

All Workflows cause the following to appear in the log files

  • java.lang.IllegalArgumentException: Could not find writer for media type text/vnd.wf4ever.wfdesc+turtle
  •     at uk.org.taverna.scufl2.api.io.WorkflowBundleIO.writeBundle(WorkflowBundleIO.java:485)

demonstration_of_configurable_iteration

example_of_conditional_invocation

Example_of_explicit_looping_output

Fetch_today_s_xkcd_comic_output

example_workflow_for_rest_and_xpath_activities

hello_anyone

hello_world

multiple_choice_quiz

pipelined_list_iteration

check_java_cryptography_unlimited_strength

simple_gbif_retrieval

spreadsheet_import_example

Workflows working but with errors

render_gene_via_biogps

  • java.nio.file.FileAlreadyExistsException  6 times

Failing Workflows

ebi_interproscan_newservices

Failed: Error invoking WSDL service

  • Reaches net.sf.taverna.wsdl.soap.WSDLSOAPInvoker
  • Appears to have the correct parameters /soapenv
  • WSDL serbvice returns an error
  • Also happens if <wsdl.generic.version>1.10.0 used
  • Does not happen in Taverna CommandLine 2.5

secure_rest_service_call_example

Using Oracle JRE (With encryption) (Checked with check_java_cryptography_unlimited_strength)

  • WARN  2014-07-09 15:48:17,816 (net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke:239) - Failed (INVOCATION) invoking net.sf.taverna.t2.activities.rest.RESTActivity@a9d1008 for job DispatchJobEvent facade0:Secure_REST_service_:REST_service_with_Basic_AuthN_and_HTTPS[]: Uncaught exception while invoking net.sf.taverna.t2.activities.rest.RESTActivity@a9d1008
    • java.lang.ExceptionInInitializerError  at javax.crypto.KeyAgreement.getInstance(KeyAgreement.java:173)
  • Caused by: java.lang.SecurityException: Can not initialize cryptographic mechanis at javax.crypto.JceSecurity.<clinit>(JceSecurity.java:86)
  • Caused by: java.lang.SecurityException: Cannot locate policy or framework files!

Using Taverna 2.5 JRE

  • javax.net.ssl.SSLPeerUnverifiedException: peer not authenticated at sun.security.ssl.SSLSessionImpl.getPeerCertificates(SSLSessionImpl.java:397)

 

 

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