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A list of the software components we already have:

  • taverna 2 server API (REST, SOAP)
  • taverna 2 client library (Ruby, Java)
  • t2flow parser lib (Ruby, Java)
    • to get workflow information (I/Os, descr, etc.) from a t2flow workflow
  • myExperiment API (REST)
    • currently this provides less information than the t2flow parser
  • myExperiment-REST lib (Ruby)
    • populates a workflow object with information from myExperiment using its REST API
    • this is incomplete since it only gets workflow information that were needed for the galaxy-taverna work

A list of what will be available soon:

Each group could list tools that they intend to implement here; libraries or other components that could be potentially reused.

Taverna Team
  • scufl2 parser (Ruby, Java)
    • to get workflow information (I/Os, descr, etc.) from a scufl2 workflow
NBIC / LUMC
  • a HAML template that given a workflow object (as returned from myExperiment-REST lib) creates an HTML form to get user inputs for that workflow
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