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The Data Manager in t2 uses a combination of custom EntityBeans and JAXB for serialising Entities.  Basically each Entity eg EntityList has an associated EntityBean - EntityListBean and getAsBean and setAsBean methods.  The Bean classes are annotated with JAXB

eg.
@Entity
@XmlRootElement(namespace = "http://taverna.sf.net/t2/cloudone/bean/", name = "dataDocument")
@XmlType(namespace = "http://taverna.sf.net/t2/cloudone/bean/", name = "dataDocument")

and discovered using SPI style lookup along with Factory classes to relate the concrete class with the bean.  It then uses JAXB to marshall/unmarshall these beans.

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