 | Work in progress The User Manual is very much work in progress, and not the complete manual. Please contact us  if we have missed something that you would like to see or we have not explained something good enough. |
| Domain-specific workflows The User Manual explains how to use the Taverna Workbench and is not domain specific. In other words, it does not show you how to solve a particular domain-specific problem, for example build an annotation pipeline workflow for prokaryotic genome. If you want domain-specific help, that can be arranged in a form of tutorial or a workshop by getting in touch with us . |
Table of Contents
Getting started
Workbench in detail
Advanced workflow configuration
Service types
- WSDL
- XML Splitters
- REST
- BioMoby
- Biomart
- SoapLab
- Rshell
- Spreadsheet Import
- String Constant
- Beanshell
- Local services
- XPath
- Tool service
- API Consumer
- Nested workflows
- Text Constant
- Interaction service
- OAuth services
Components
Workflow authoring lifecycle
- Adding new services
- Naming best practice
- Annotations
- Example values
- myExperiment
- Service catalogue
- Validation
- Errors
- Intermediate values (Provenance)
- Offline services
- Result handling (supported renderers)
- Workflow inputs and outputs
Security in Taverna
Preferences
- Data and provenance preferences
- Diagram preferences
- HTTP proxy preferences
- myExperiment preferences
- Service Catalogue preferences
- Service providers preferences
- Tool invocation preferences
- Validation report preferences
- Workbench preferences
- Increase memory allocation
- Taverna home directory
- Interaction preferences
- Components preferences
Plugins
Associated tools
Labels
Page:
Getting started
Page: Workbench in detail
Page: Advanced workflow configuration
Page: Service types
Page: Components
Page: Workflow authoring lifecycle
Page: Security in Taverna
Page: Preferences
Page: Plugins
Page: Associated tools
Page: Workbench in detail
Page: Advanced workflow configuration
Page: Service types
Page: Components
Page: Workflow authoring lifecycle
Page: Security in Taverna
Page: Preferences
Page: Plugins
Page: Associated tools