This table is outdated and is provided only until the DOI/URLs have been moved. See myGrid Publications instead. |
| Author | Title | Year | Journal/Proceedings | Reftype | DOI/URL |
|---|---|---|---|---|---|
| Addis, M., Ferris, J., Greenwood, M., Li, P., Marvin, D., Oinn, T. and Wipat, A. | Experiences with e-Science workflow specification and enactment in bioinformatics | 2003 | All Hands Meeting | inproceedings | URL |
| Albeck, S., Alzari, P., Andreini, C., Banci, L., Berry, I.M., Bertini, I., Cambillau, C., Canard, B., Carter, L., Cohen, S.X., Diprose, J.M., Dym, O., Esnouf, R.M., Felder, C., Ferron, F., Guillemot, F., Hamer, R., Ben Jelloul, M., Laskowski, R.A., Laurent, T., Longhi, S., Lopez, R., Luchinat, C., Malet, H., Mochel, T., Morris, R.J., Moulinier, L., Oinn, T., Pajon, A., Peleg, Y., Perrakis, A., Poch, O., Prilusky, J., Rachedi, A., Ripp, R., Rosato, A., Silman, I., Stuart, D.I., Sussman, J.L., Thierry, J.-C., Thompson, J.D., Thornton, J.M., Unger, T., Vaughan, B., Vranken, W., Watson, J.D., Whamond, G. and Henrick, K. | SPINE bioinformatics and data-management aspects of high-throughput structural biology | 2006 | Acta Crystallographica Section D Vol. 62(10), pp. 1184-1195 | article | DOI |
| Alpdemir, N., Gounaris, A., Mukherjee, A., Fitzgerald, D., Paton, N., Watson, P., Fernandes, A. and Smith, J. | Experience on Performance Evaluation with OGSA-DQP | 2005 | All Hands Meeting | inproceedings | URL |
| Alpdemir, N., Mukherjee, A., Gounaris, A., Paton, N., Fernandes, A., Sakellariou, R., Watson, P. and Li, P. | Using OGSA-DQP to Support Scientific Applications for the Grid | 2005 | Vol. 3458Scientific Applications of Grid Computing, pp. 13-24 | inproceedings | DOI |
| Alpdemir, N., Mukherjee, A., Gounaris, A., Paton, N., Watson, P., Fernandes, A. and Fitzgerald, D. | OGSA-DQP: A Service for Distributed Querying on the Grid | 2004 | Vol. 2992International Conference on Extending Database Technology, pp. 858-861 | inproceedings | DOI |
| Alpdemir, N., Mukherjee, A., Paton, N., Fernandes, A., Gounaris, A. and Smith, J. | An Experience Report on Designing and Building OGSA-DQP: A Service Based Distributed Query Processor for the Grid | 2003 | Global Grid Forum Workshop on Designing and Building Grid Services | inproceedings | URL |
| Alpdemir, N., Mukherjee, A., Paton, N., Fernandes, A., Watson, P., Glover, K., Greenhalgh, C., Oinn, T. and Tipney, H. | Contextualised Workflow Execution in MyGrid | 2005 | Vol. 3470European Grid Conference, pp. 444-453 | inproceedings | DOI |
| Alpdemir, N., Mukherjee, A., Paton, N., Watson, P., Fernandes, A., Gounaris, A. and Smith, J. | Service-Based Distributed Querying on the Grid | 2003 | Grid Computing, pp. 467-482 | inproceedings | DOI |
| Alper, P., Corcho, O. and Goble, C. | Understanding Semantic Aware Grid Middleware for e-Science | 2008 | Computing and Informatics Vol. 27, pp. 93-118 | article | |
| Ananiadou, S., Kell, D. and Tsujii, J.-I. | Text mining and its potential applications in systems biology. | 2006 | Trends in Biotechnology Vol. 24, pp. 571-579 | article | DOI |
| Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M.D.R., Durbin, R., Falquet, L., Fleischmann, W., Gouzy, J., Hermjakob, H., Hulo, N., Jonassen, I., Kahn, D., Kanapin, A., Karavidopoulou, Y., Lopez, R., Marx, B., Mulder, N.J., Oinn, T., Pagni, M., Servant, F., Sigrist, C.J.A. and Zdobnov, E.M. | The InterPro database, an integrated documentation resource for protein families, domains and functional sites | 2001 | Nucleic Acids Research Vol. 29(1), pp. 37-40 | article | DOI |
| Aragao, V., Fernandes, A. and Goble, C. | Towards an Architecture for Personalization and Adaptivity in the Semantic Web | 2001 | International Conference on Information Integration and Web-Based Applications and Service, pp. 139-149 | inproceedings | |
| Aranguren, M., Bechoffer, S., Lord, P., Sattler, U. and Stevens, R. | Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL | 2007 | BMC Bioinformatics Vol. 8, pp. 57+ | article | DOI |
| Aranguren, M., Wroe, C., Goble, C. and Stevens, R. | In situ migration of handcrafted ontologies to reason-able forms | 2008 | Data and Knowledge Engineering Vol. In Press, Corrected Proof, pp. - | article | DOI |
| Aranguren, M.E., Antezana, E., Kuiper, M. and Stevens, R. | Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology. | 2008 | BMC bioinformatics Vol. 9 Suppl 5 | article | DOI URL |
| Ashish, N., Goble, C. and Sheth, A. | Introduction | 2005 | International Journal of Digital Libraries Vol. 5(2), pp. 71 | article | DOI |
| Atkinson, M., De Roure, D., Dunlop, A., Fox, G., Henderson, P., Hey, T., Paton, N., Newhouse, S., Parastatidis, S., Trefethen, A., Watson, P. and Webber, J. | Web Service Grids: an evolutionary approach: Research Articles | 2005 | Concurrency and Computation: Practice and Experience Vol. 17(2-4), pp. 377-389 | article | DOI |
| Bada, M., McEntire, R., Wroe, C. and Stevens, R. | GOAT: The Gene Ontology Annotation Tool | 2003 | All Hands Meeting | inproceedings | URL |
| Bada, M., Stevens, R., Goble, C., Gil, Y., Ashburner, M., Blake, J.A., Cherry, J.M., Harris, M. and Lewis, S. | A short study on the success of the Gene Ontology | 2004 | Web Semantics: Science, Services and Agents on the World Wide Web Vol. 1(2)World Wide Web Conference, pp. 235-240 | inproceedings | DOI |
| Bada, M., Turi, D., Mcentire, R. and Stevens, R. | Using reasoning to guide annotation with gene ontology terms in GOAT | 2004 | ACM SIGMOD Record Vol. 33(2), pp. 27-32 | article | DOI |
| Bechhofer, S., Ainsworth, J., Bhagat, J., Buchan, I., Crouch, P., Cruickshank, D., Delderfield, M., Dunlop, I., Gamble, M., Goble, C., Michaelides, D., Missier, P., Owen, S., Newman, D., De Roure, D. and Sufi, S. | Why Linked Data is Not Enough for Scientists | 2010 | Sixth IEEE e-Science conference | article | URL |
| Bechhofer, S., Buchan, I., Roure, D.D., Missier, P., Ainsworth, J., Bhagat, J., Couch, P., Cruickshank, D., Delderfield, M., Dunlop, I., Gamble, M., Michaelides, D., Owen, S., Newman, D., Sufi, S. and Goble, C. | Why linked data is not enough for scientists | 2013 | Future Generation Computer Systems Vol. 29(2), pp. 599 - 611 | article | DOI URL |
| Bechhofer, S., Carr, L., Goble, C., Kampa, S. and Miles-Board, T. | The Semantics of Semantic Annotation | 2002 | DOA/CoopIS/ODBASE 2002 Confederated International Conferences, pp. 1152-1167 | inproceedings | DOI |
| Bechhofer, S., De Roure, D., Gamble, M., Goble, C. and Buchan, I. | Research Objects: Towards Exchange and Reuse of Digital Knowledge | 2010 | The Future of the Web for Collaborative Science | article | URL |
| Bechhofer, S. and Goble, C. | Towards Annotation using DAML+OIL | 2001 | Workshop on Knowledge Markup and Semantic Annotation | inproceedings | |
| Bechhofer, S., Goble, C. and Horrocks, I. | DAML+OIL is not enough | 2001 | Semantic Web Working Symposium | inproceedings | |
| Bechhofer, S., Goble, C., Kampa, S., Hall, M. and De Roure, D. | COHSE: Conceptual Open Hypermedia Service | 2003 | Annotation for the Semantic Web | inbook | |
| Bechhofer, S., Horrocks, I., Goble, C. and Stevens, R. | OilEd: A Reason-able Ontology Editor for the Semantic Web | 2001 | Joint German/Austrian Conference on AI, pp. 396-408 | inproceedings | DOI |
| Bechhofer, S., Stevens, R. and Lord, P. | GOHSE: Ontology driven linking of biology resources | 2006 | Web Semantics: Science, Services and Agents on the World Wide Web Vol. 4(3)Semantic Web for Life Sciences, pp. 155-163 | article | DOI |
| Bechhofer, S., Yesilada, Y., Horan, B. and Goble, C. | Knowledge-Driven Hyperlinks: Linking in the Wild | 2006 | Vol. 4018Adaptive Hypermedia and Adaptive Web-Based Systems, pp. 1-10 | inproceedings | DOI |
| Bechhofer, S., Yesilada, Y., Stevens, R., Jupp, S. and Horan, B. | Using Ontologies and Vocabularies for Dynamic Linking | 2008 | Internet Computing, IEEE Vol. 12(3), pp. 32-39 | article | DOI |
| Belhajjame, K. | Semantic Replaceability of eScience Web Services | 2007 | E-SCIENCE '07: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, pp. 449-456 | inproceedings | DOI |
| Belhajjame, K. | Addressing the Issue of Service Volatility in Scientific Workflows | 2007 | ICSOC '07: Proceedings of the 5th international conference on Service-Oriented Computing, pp. 377-382 | inproceedings | DOI |
| Belhajjame, K., Collet, C. and Vargas-Solar, G. | A Flexible Workflow Model for Process-Oriented Applications | 2001 | WISE '01: Proceedings of the Second International Conference on Web Information Systems Engineering (WISE'01) Volume 1, pp. 72 | inproceedings | |
| Belhajjame, K., Corcho, O., Garijo, D., Zhao, J., Missier, P., Newman, D., Palma, R., Bechhofer, S., García Cuesta, E., Gómez-Pérez, J.M., Soiland-Reyes, S., Verdes-Montenegro, L., De Roure, D. and Goble, C. | Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse | 2012 | Proceedings of Workshop on the Semantic Publishing | inproceedings | URL |
| Belhajjame, K., Embury, S., Fan, H., Goble, C., Hermjakob, H., Hubbard, S., Jones, D., Jones, P., Martin, N., Oliver, S., Orengo, C., Paton, N., Poulovassilis, A., Siepen, J., Stevens, R., Taylor, C., Vinod, N., Zamboulis, L. and Zhu, W. | Proteome Data Integration: Characteristics and Challenges | 2005 | All Hands Meeting | inproceedings | URL |
| Belhajjame, K., Embury, S., Paton, N., Stevens, R. and Goble, C. | Automatic Annotation of Web Services Based on Workflow Definitions | 2006 | Vol. 4273International Semantic Web Conference, pp. 116-129 | inproceedings | DOI |
| Belhajjame, K. and Embury, S.M. | A Model-Driven Approach to Service Composition in Virtual Enterprises | 2006 | SCC '06: Proceedings of the IEEE International Conference on Services Computing, pp. 214-221 | inproceedings | DOI |
| Belhajjame, K., Embury, S.M., Paton, N.W., Stevens, R. and Goble, C.A. | Automatic annotation of Web services based on workflow definitions | 2008 | ACM Trans. Web Vol. 2(2), pp. 1-34 | article | DOI |
| Belhajjame, K., Goble, C., Soiland-Reyes, S. and De Roure, D. | Fostering Scientific Workflow Preservation through Discovery of Substitute Services | 2011 | E-Science (e-Science), 2011 IEEE 7th International Conference on, pp. 97-104 | inproceedings | DOI |
| Belhajjame, K., Goble, C., Tanoh, F., Bhagat, J., Wolstencroft, K., Stevens, R., Nzuobontane, E., McWilliam, H., Laurent, T. and Lopez, R. | BioCatalogue: A Curated Web Service Registry for the Life Science Community | 2008 | Microsoft eScience conference | inproceedings | URL |
| Belhajjame, K., Jones, A.R. and Paton, N.W. | A toolkit for capturing and sharing FuGE experiments | 2008 | Bioinformatics Vol. 24(22), pp. 2647-2649 | article | DOI |
| Belhajjame, K., Vargas-Solar, G. and Collet, C. | Pyros - an environment for building and orchestrating open services | 2005 | SCC '05: Proceedings of the 2005 IEEE International Conference on Services Computing, pp. 155-164 | inproceedings | DOI |
| Belhajjame, K., Vargas-Solar, G. and Collet, C. | Building Information Systems by Orchestrating Open Services | 2005 | IDEAS '05: Proceedings of the 9th International Database Engineering & Application Symposium, pp. 27-36 | inproceedings | DOI |
| Belhajjame, K., Wolstencroft, K., Corcho, O., Oinn, T., Tanoh, F., Williams, A. and Goble, C. | Metadata Management in the Taverna Workflow System | 2008 | IEEE International Symposium on Cluster Computing and the Grid | inproceedings | |
| Belhajjame, K., Zhao, J., Garijo, D., Garrido, A., Soiland-Reyes, S., Alper, P. and Corcho, O. | A workflow PROV-corpus based on taverna and wings | 2013 | Proceedings of the Joint EDBT/ICDT 2013 Workshops, pp. 331-332 | inproceedings | DOI URL |
| Belhajjame KhaIid an Missier, P. and Goble, C. | Data Provenance in Scientific Workflows | 2009 | Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare | inbook | |
| Bentley, R., Brooke, J., Csillaghy, A., Fellows, D., Le Blanc, A., Messerotti, M., Perez-Suarez, D., Pierantoni, G. and Soldati, M. | HELIO: Discovery and Analysis of Data in Heliophysics | 2011 | E-Science (e-Science), 2011 IEEE 7th International Conference on, pp. 248-255 | inproceedings | DOI |
| Bhagat, J., Tanoh, F., Nzuobontane, E., Laurent, T., Orlowski, J., Roos, M., Wolstencroft, K., Aleksejevs, S., Stevens, R., Pettifer, S., Lopez, R. and Goble, C. | BioCatalogue: a universal catalogue of web services for the life sciences | 2010 | Nucleic Acids Research | article | DOI |
| Blanc, A., Brooke, J., Fellows, D., Soldati, M., Perez-Suarez, D., Marassi, A. and Santin, A. | Workflows for Heliophysics | 2013 | Journal of Grid Computing Vol. 11(3), pp. 481-503 | article | DOI URL |
| Bradley, J., Brown, C., Carpenter, B., Chang, V., Crisp, J., Crouch, S., De Roure, D., Newhouse, S., Li, G., Papay, J., Walker, C. and Wookey, A. | The OMII Software Distribution | 2006 | All Hands Meeting | inproceedings | URL |
| Brenchley, R., Tariq, H., Mcelhinney, H., Szoor, B., Huxley-Jones, J., Stevens, R., Matthews, K. and Tabernero, L. | The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains | 2007 | BMC Genomics Vol. 8, pp. 434+ | article | DOI URL |
| Brenninkmeijer, C., Evelo, C., Goble, C., Gray, A., Groth, P., Pettifer, S., Stevens, R., Williams, A. and Willighagen, E. | Scientific Lenses: An Approach to Dynamically Vary the Relationships between Datasets | 2013 | Intelligent Systems for Molecular Biology and European Conference on Computational Biology | inproceedings | |
| Brooke, J., Fellows, D., Garwood, K. and Goble, C. | Semantic Matching of Grid Resource Descriptions | 2004 | Vol. 3165European Across Grids Conference, pp. 240-24 | inproceedings | DOI |
| Brooke, J., Marsh, J., Pettifer, S. and Sastry, L.S. | The importance of locality in the visualization of large datasets: Research Articles | 2007 | Concurrency and Computation: Practice and Experience Vol. 19(2), pp. 195-205 | article | DOI |
| Brown, A., Pettifer, S. and Stevens, R. | Evaluation of a non-visual molecule browser | 2004 | ACM SIGACCESS Accessibility and Computing Vol. 77-78, pp. 40-47 | article | DOI |
| Camon, E., Magrane, M., Barrell, D., Binns, D., Fleischmann, W., Kersey, P., Mulder, N., Oinn, T., Maslen, J., Cox, A. and Apweiler, R. | The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. | 2003 | Genome Research Vol. 13(4), pp. 662-672 | article | DOI |
| Carr, L., Hall, W., Bechhofer, S. and Goble, C. | Conceptual linking: ontology-based open hypermedia | 2001 | International World Wide Web Conference, pp. 334-342 | inproceedings | DOI |
| Chen, L., Cox, S., Goble, C., Keane, A., Roberts, A., Shadbolt, N., Smart, P. and Tao, F. | Engineering Knowledge for Engineering Grid Applications | 2002 | EuroWeb | inproceedings | |
| Chen, L., Cox, S., Tao, F., Shadbolt, N., Puleston, C. and Goble, C. | Empowering Resource Providers to Build the Semantic Grid | 2004 | IEEE/WIC/ACM International Conference on Web Intelligence, pp. 271-277 | inproceedings | DOI |
| Chen, L., Shadbolt, N. and Goble, C. | A Semantic Web-Based Approach to Knowledge Management for Grid Applications | 2007 | Knowledge and Data Engineering, IEEE Transactions on Vol. 19(2), pp. 283-296 | article | DOI |
| Chen, L., Shadbolt, N., Goble, C. and Tao, F. | Managing Semantic Metadata for Web Grid Services | 2006 | International Journal of Web Services Research Vol. 3(4), pp. 73-94 | article | URL |
| Chen, L., Shadbolt, N., Goble, C., Tao, F., Cox, S., Puleston, C. and Smart, P. | Towards a Knowledge-Based Approach to Semantic Service Composition | 2003 | Vol. 2870International Semantic Web Conference, pp. 319-334 | inproceedings | DOI |
| Chen, L., Shadbolt, N., Tao, F. and Goble, C. | Engineering Grid Resources' Metadata for Resource and Knowledge Sharing | 2006 | International Journal of Web Services Research Vol. 4, pp. 73-94 | article | |
| Chen, L., Shadbolt, N., Tao, F., Goble, C., Puleston, C. and Cox, S. | Semantics-Assisted Problem Solving On The Semantic Grid | 2005 | Computational Intelligence Vol. 21(2), pp. 157-176 | article | DOI |
| Chen, L., Shadbolt, N., Tao, F., Puleston, C., Goble, C. and Cox, S. | Exploiting Semantics for e-Science on the Semantic Grid | 2003 | IEEE/WIC International Conference on Web Intelligence / Intelligent Agent Technology | inproceedings | |
| Clark, T., Ciccarese, P. and Goble, C.A. | Micropublications: a Semantic Model for Claims, Evidence, Arguments and Annotations in Biomedical Communications | 2013 | CoRR Vol. abs/1305.3506 | article | |
| Corcho, O. | Knowledge of the Grid: a Grid resource ontology | 2006 | Cracow Grid Workshop | inproceedings | |
| Corcho, O., Alper, P., Kotsiopoulos, I., Missier, P., Bechhofer, S. and Goble, C. | An overview of S-OGSA: A Reference Semantic Grid Architecture | 2006 | Web Semantics: Science, Services and Agents on the World Wide Web Vol. 4(2)Semantic Grid --The Convergence of Technologies, pp. 102-115 | article | DOI |
| Corcho, O., Alper, P., Kotsiopoulos, I., Missier, P., Bechhofer, S. and Goble, C. | S-OGSA: a Reference Semantic Grid Architecture | 2006 | Elsevier Journal Web Semantics, Special Section on Semantic Grid: Semantic Grid --The Convergence of Technologies | article | |
| Corcho, O., Alper, P., Missier, P., Bechhofer, S. and Goble, C. | Grid metadata management: Requirements and architecture | 2007 | IEEE/ACM International Conference on Grid Computing, pp. 97-104 | inproceedings | DOI |
| Corcho, O., Alper, P., Missier, P., Bechhofer, S., Goble, C. and Xing, W. | Metadata Management in S-OGSA | 2007 | International Conference on Computational Science, pp. 712-719 | inproceedings | DOI |
| Corcho, O., Alper, P., Missier, P., Kotsiopoulos, I., Dunlop, I., Bechhofer, S. and Goble, C. | Semantic Binding Specifications in S-OGSA | 2006 | Cracow Grid Workshop | inproceedings | URL |
| Craddock, T., Lord, P., Harwood, C. and Wipat, A. | e-Science Tools For The Genomic Scale Characterisation Of Bacterial Secreted Proteins | 2006 | All Hands Meeting, pp. 788-795 | inproceedings | URL |
| Cumberbatch, C., Embury, S. and Goble, C. | Bringing a business rule perspective to resource discovery | 2002 | Rule Markup Languages for Business Rules on the Semantic Web | inproceedings | |
| De Roure, D. | e-Research the JISC way | 2006 | All Hands Meeting | inproceedings | URL |
| De Roure, D. | The Semantic Grid: Past, Present and Future | 2005 | European Semantic Web Conference, pp. 726 | inproceedings | DOI |
| De Roure, D., Bechhofer, S., Goble, C. and Newman, D. | Scientific Social Objects: The Social Objects and Multidimensional Network of the myExperiment Website | 2011 | Proceeding of: PASSAT/SocialCom 2011, pp. 1398-1402 | inproceedings | DOI |
| De Roure, D. and Frey, J. | Three Perspectives on Collaborative Knowledge Acquisition in e-Science | 2007 | Workshop on Semantic Web for Collaborative Knowledge Acquisition | inproceedings | URL |
| De Roure, D., Frey, J., Michaelides, D. and Page, K. | The Collaborative Semantic Grid | 2006 | International Symposium on Collaborative Technologies and Systems, pp. 411-418 | inproceedings | DOI |
| De Roure, D., Gil, Y. and Hendler, J. | Guest editors' introduction: E-Science | 2004 | Intelligent Systems, IEEE Vol. 19(1), pp. 24-25 | article | DOI |
| De Roure, D. and Goble, C. | Re-evaluating the Grid: the social life of programs | 2008 | CoreGRID series | book | URL |
| De Roure, D. and Goble, C. | Anchors in Shifting Sand: the Primacy of Method in the Web of Data | 2010 | Web Science Conference | inproceedings | URL |
| De Roure, D. and Goble, C. | Software Design for Empowering Scientists | 2009 | IEEE Software Vol. 26(1), pp. 88-95 | article | DOI URL |
| De Roure, D. and Goble, C. | myExperiment: A Web 2.0 Virtual Research Environment for Research using Computation and Services | 2009 | Workshop On Integrating Digital Library Content with Computational Tools and Services at JCDL 2009 | inproceedings | URL |
| De Roure, D. and Goble, C. | Lessons from myExperiment: Two insights into emerging e-Research practice | 2009 | UK e-Science All Hands Meeting | inproceedings | URL |
| De Roure, D. and Goble, C. | Lessons from myExperiment: Research Objects for Data Intensive Research | 2009 | eScience Workshop 2009 | inproceedings | URL |
| De Roure, D. and Goble, C. | Research In a Connected World | 2009 | inbook | URL | |
| De Roure, D. and Goble, C. | myExperiment - A Web 2.0 Virtual Research Environment | 2007 | International Workshop on Virtual Research Environments and Collaborative Work Environments | inproceedings | URL |
| De Roure, D. and Goble, C. | The Semantic Grid | 2002 | VizGrid Symposium | inproceedings | |
| De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Fisher, P., Hull, D., Michaelides, D., Newman, D., Procter, R., Lin, Y. and Poschen, M. | Towards open science: the myExperiment approach | 2010 | Concurrency and Computation: Practice and Experience | article | DOI |
| De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Michaelides, D. and Newman, D. | The myExperiment Open Repository for Scientific Workflows | 2009 | Open Repositories 2009 | inproceedings | URL |
| De Roure, D., Goble, C., Bhagat, J., Cruickshank, D., Goderis, A., Michaelides, D. and Newman, D. | myExperiment: Defining the Social Virtual Research Environment | 2008 | IEEE International Conference on e-Science | inproceedings | URL |
| De Roure, D., Goble, C. and Stevens, R. | The Design and Realisation of the myExperiment Virtual Research Environment for Social Sharing of Workflows | 2008 | Future Generation Computer Systems Vol. 25, pp. 561-567 | article | DOI URL |
| De Roure, D., Goble, C. and Stevens, R. | Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows | 2007 | IEEE International Conference on e-Science and Grid Computing, pp. 603-610 | inproceedings | DOI |
| De Roure, D. and Hendler, J. | E-Science: the grid and the Semantic Web | 2004 | Intelligent Systems, IEEE Vol. 19(1), pp. 65-71 | article | DOI |
| De Roure, D., Jennings, N. and Shadbolt, N. | The Semantic Grid: Past, Present, and Future | 2005 | Proceedings of the IEEE Vol. 93(3)Proceedings of the IEEE, pp. 669-681 | article | DOI |
| De Roure, D. and Sure, Y. | Semantic Grid--The convergence of technologies | 2006 | Web Semantics: Science, Services and Agents on the World Wide Web Vol. 4(2)Semantic Grid --The Convergence of Technologies, pp. 82-83 | article | DOI |
| Divoli, A., Winter, R., Pettifer, S. and Attwood, T. | BioQSpace: an interactive visualisation tool for clustering MEDLINE abstracts | 2005 | Computational Biology | inproceedings | URL |
| Egglestone, S., Alpdemir, N., Greenhalgh, C., Mukherjee, A. and Roberts, I. | A portal interface to myGrid workflow technology | 2005 | All Hands Meeting | inproceedings | URL |
| Field, D., Garrity, G., Gray, T., Morrison, N., Selengu, J., Sterk, P., Tatusoca Tatiana, Thomson, N., Allen, M., Angiuoli, S., Ashburner, M., Axelrod, N., Baldauf, S., Ballard, S., Boore, J., Cochrane, G., Cole, J., Dawyndt, P., De Vos, P., dePamphilis null, C., Edwards, R., Faruque, N., Feldman, R., Gilbert, J., Gilna, P., Gloeckner, F., Goldstein, P., Guralnick, R., Haft, D., Hancock, D., Hermjakob, H., Hertz-Fowler, C., Hugenholtz, P., Joint, I., Kagan, L., Kane, M., Kennedy, J., Kowalchuk, G., Kottman, R., Kolker, E., Kravitz, S., Kyrpides, N., Leebens-Mack, J., Lewis, S., Li, K., Lister, A., Lord, P., Maltsev, N., Markowitz, V., Martiny, J., Methe, B., Mizrachi, I., Moxon, R., Nelson, K., Parkhill, J., Proctor, L., White, O., Sansone, S.-A., Spiers, A., Stevens, R., Swift, P., Taylor, C., Tateno, Y., Tett, A., Turner, S., Ussey, D., Vaughan, B., Ward, N., Whetzel, P., Gil, I., Wilson, G. and Wipat, A. | The minimum information about a genome sequence (MIGS) specification | 2008 | Nature Biotechnology Vol. 26, pp. 541-547 | article | DOI |
| Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. and Brass, A. | A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis. | 2007 | Nucleic Acids Research Vol. 35(16), pp. 5625-5633 | article | DOI |
| Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. and Brass, A. | A systematic strategy for the discovery of candidate genes responsible for phenotypic variation | 2007 | BMC Bioinformatics Vol. 8(Suppl 8), pp. 7 | article | DOI |
| Fisher, P., Noyes, H., Kemp, S., Stevens, R. and Brass, A. | A systematic strategy for the discovery of candidate genes responsible for phenotypic variation | 2009 | Methods in molecular biology Vol. 573, pp. 329-345 | article | DOI |
| Flanagan, K., Stevens, R., Pocock, M., Lee, P. and Wipat, A. | Ontology for genome comparison and genomic rearrangements: Conference Papers | 2004 | Comparative and Functional Genomics Vol. 5(6-7), pp. 537-544 | article | DOI |
| Gaizauskas, R., Davis, N., Demetriou, G., Guo, Y. and Roberts, I. | Integrating Biomedical Text Mining Services into a Distributed Workflow Environment | 2004 | All Hands Meeting | inproceedings | URL |
| Gaizauskas, R., Hepple, M., Davis, N., Guo, Y., Harkema, H., Roberts, A. and Roberts, I. | AMBIT: Acquiring Medical and Biological Information from Text | 2003 | All Hands Meeting, pp. 370-373 | inproceedings | URL |
| Gamble, M. and Goble, C. | Quality, Trust, and Utility of Scientific Data on the Web: Towards a Joint Model | 2011 | Proceedings of the ACM WebSci'11 | inproceedings | URL |
| Gamble, M. and Goble, C. | Standing on the shoulders of the trusted web: Trust, Scholarship and Linked Data. | 2010 | Proceedings of the WebSci10: Extending the Frontiers of Society On-Line | inproceedings | URL |
| Garwood, K., Lord, P., Parkinson, H., Paton, N. and Goble, C. | Pedro Ontology Services: A Framework for Rapid Ontology Markup | 2005 | European Semantic Web Conference, pp. 578-591 | inproceedings | DOI |
| Gaudet, P., Bairoch, A., Field, D., Sansone, S.-A., Taylor, C., Attwood, T.K., Bateman, A., Blake, J.A., Bult, C.J., Cherry, J.M., Chisholm, R.L., Cochrane, G., Cook, C.E., Eppig, J.T., Galperin, M.Y., Gentleman, R., Goble, C.A., Gojobori, T., Hancock, J.M., Howe, D.G., Imanishi, T., Kelso, J., Landsman, D., Lewis, S.E., Mizrachi, I.K., Orchard, S., Ouellette, B.F.F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P.N., Smedley, D., Southan, C., Tan, T.W., Tatusova, T., Whetzel, P.L., White, O. and Yamasaki, C. | Towards BioDBcore: a community-defined information specification for biological databases | 2011 | Nucleic Acids Research Vol. 39(suppl 1), pp. D7-D10 | article | DOI URL |
| Gibson, A., Gamble, M., Wolstencroft, K., Oinn, T. and Goble, C. | The Data Playground: An Intuitive Workflow Specification Environment | 2007 | IEEE International Conference on e-Science and Grid Computing, pp. 59-68 | inproceedings | DOI |
| Gibson, A., Gamble, M., Wolstencroft, K., Oinn, T., Goble, C., Belhajjame, K. and Missier, P. | The data playground: An intuitive workflow specification environment | 2009 | Future Generation Computer Systems Vol. 25(4), pp. 453-459 | article | DOI |
| Gibson, A., Wolstencroft, K. and Stevens, R. | Promotion of Ontological Comprehension: Exposing Terms and Metadata with Web 2.0 | 2007 | Workshop on Social and Collaborative Construction of Structured Knowledge | inproceedings | URL |
| Gil, Y., Deelman, E., Ellisman, M., Fahringer, T., Fox, G., Gannon, D., Goble, C., Livny, M., Moreau, L. and Myers, J. | Examining the Challenges of Scientific Workflows | 2007 | Computer Vol. 40(12), pp. 24-32 | article | DOI |
| Goble, C. | Using the Semantic Web for e-Science: Inspiration, Incubation, Irritation | 2005 | International Semantic Web Conference, pp. 1-3 | inproceedings | DOI |
| Goble, C. | Putting semantics into e-Science and grids | 2005 | International Conference on e-Science and Grid Computing, pp. 1 pp.+ | inproceedings | DOI |
| Goble, C. | The Montagues and the Capulets Part 2 | 2005 | ACM International Conference on Knowledge Capture | inproceedings | |
| Goble, C. | The Grid Needs You! Enlist Now | 2003 | On The Move to Meaningful Internet Systems, pp. 589-600 | inproceedings | DOI |
| Goble, C. | The Semantic Web: A Killer App for AI? | 2003 | Vol. 2443International Conference on Artificial Intelligence: Methodology, Systems, and Applications | inproceedings | DOI |
| Goble, C. | The Semantic Web: an evolution for a revolution (editor) | 2003 | Elsevier Journal of Computer Networks Vol. 42(5), pp. 551-556 | article | DOI |
| Goble, C. | The Low Down on e-Science and Grids for Biology | 2001 | Comparative and Functional Genomics Vol. 2(6), pp. 365-370 | article | DOI |
| Goble, C. and Bechhofer, S. | OntoGrid: A Semantic Grid Reference Architecture | 2005 | CT Watch Quarterly Vol. 1(4) | article | URL |
| Goble, C., Bechhofer, S., Carr, L., De Roure, D. and Hall, W. | Conceptual Open Hypermedia = The Semantic Web? | 2001 | International Workshop on the Semantic Web | inproceedings | URL |
| Goble, C., Bhagat, J., Aleksejevs, S., Cruickshank, D., Michaelides, D., Newman, D., Borkum, M., Bechhofer, S., Roos, M., Li, P. and De Roure, D. | myExperiment: a repository and social network for the sharing of bioinformatics workflows | 2010 | Nucleic Acids Research | article | DOI URL |
| Goble, C., Corcho, O., Alper, P. and De Roure, D. | e-Science and the Semantic Web: A Symbiotic Relationship | 2006 | International Conference on Algorithmic Learning Theory, pp. 12-12 | inproceedings | DOI |
| Goble, C., Corcho, O. and Xing, W. | Active Ontology: An Information Integration Approach for Dynamic Information Sources | 2007 | International Workshop on Semantic and Grid Computing | inproceedings | |
| Goble, C. and De Roure, D. | The Semantic Web and Grid Computing | 2002 | Real World Semantic Web Applications | inbook | |
| Goble, C. and De Roure, D. | The Semantic Grid: Building Bridges and Busting Myths | 2004 | European Conference on Artificial Intelligence, pp. 1129-1135 | inproceedings | |
| Goble, C. and De Roure, D. | Data Intensive Computing: The Fourth Paradigm of Scientific Discovery | 2009 | inbook | URL | |
| Goble, C. and De Roure, D. | Curating Scientific Web Services and Workflows | 2008 | Educause Review Vol. 43 | article | URL |
| Goble, C. and De Roure, D. | myExperiment: social networking for workflow-using e-scientists | 2007 | Workshop on Workflows in support of large-scale science, pp. 1-2 | inproceedings | DOI |
| Goble, C. and De Roure, D. | Grid 3.0: Services, semantics and society | 2007 | IEEE/ACM International Conference on Grid Computing, pp. 1-1 | inproceedings | DOI |
| Goble, C. and De Roure, D. | The Grid: an application of the semantic web | 2002 | ACM SIGMOD Record Vol. 31(4), pp. 65-70 | article | DOI |
| Goble, C., De Roure, D., Shadbolt, N. and Fernandes, A. | Enhancing Services and Applications with Knowledge and Semantics | 2003 | The Grid 2: Blueprint for a New Computing Infrastructure | inbook | |
| Goble, C., Gomez-Perez, A., Gonzalez-Cabero, R. and Perez-Hernandez, M. | ODEGSG Framework, Knowledge-Based Annotation and Design of Grid Services | 2005 | Vol. 3826International Conference on Service-Oriented Computing, pp. 341-352 | inproceedings | DOI |
| Goble, C., Gomez-Perez, A., Gonzalez-Cabero, R. and Perez-Hernandez, M. | ODESGS framework, knowledge-based markup for semantic grid services | 2005 | International Conference on Knowledge Capture, pp. 199-200 | inproceedings | DOI |
| Goble, C., Kotsiopoulos, I., Corcho, O., Alper, P. and Bechhofer, S. | S-OGSA as a Reference Architecture for OntoGrid and for the Semantic Grid | 2006 | GGF Semantic Grid Workshop | inproceedings | |
| Goble, C., Kuo, D., Kotsiopoulos, I., Corcho, O., Alper, P. and Bechhofer, S. | Towards a Semantic Grid Architecture | 2005 | CoreGrid workshop on Knowledge and Data Management in Grids. | inproceedings | |
| Goble, C. and Ludascher, B. | Introduction | 2005 | ACM SIGMOD Record Vol. 34(3), pp. 3-4 | article | URL |
| Goble, C., Missier, P. and De Roure, D. | McGraw-Hill Yearbook of Science & Technology 2009 | 2009 | inbook | URL | |
| Goble, C., Pettifer, S., Stevens, R. and Greenhalgh, C. | Knowledge Integration: In silico Experiments in Bioinformatics | 2003 | The Grid 2: Blueprint for a New Computing Infrastructure | inbook | |
| Goble, C. and Stevens, R. | State of the nation in data integration for bioinformatics. | 2008 | Journal of Biomedical Informatics | article | DOI |
| Goble, C. and Stevens, R. | Managing Biological Information Using Biological Knowledge | 2001 | Network Tools and Applications in Biology | inproceedings | |
| Goble, C., Stevens, R. and Bechhofer, S. | The Semantic Web and Knowledge Grids | 2005 | Drug Discovery Today: Technologies Vol. 2(3), pp. 225-233 | article | DOI |
| Goble, C., Stevens, R., Hull, D., Wolstencroft, K. and Lopez, R. | Data Curation + Process Curation = Data Integration + Science | 2008 | Briefings in Bioinformatics | article | |
| Goble, C., Stevens, R., Ng, G., Bechhofer, S., Paton, N., Baker, P., Peim, M. and Brass, A. | Transparent access to multiple bioinformatics information sources | 2001 | IBM Systems Journal Vol. 40(2) | article | DOI |
| Goble, C., Wolstencroft, K., Goderis, A., Hull, D., Zhao, J., Alper, P., Lord, P., Wroe, C., Belhajjame, K., Turi, D., Stevens, R., Oinn, T. and De Roure, D. | Knowledge discovery for biology with Taverna | 2007 | Semantic Web: Revolutionising Knowledge Discovery in Life Sciences | inbook | |
| Goble, C. and Wroe, C. | The Montagues and the Capulets | 2004 | Comparative and Functional Genomics Vol. 5(8), pp. 623-632 | article | DOI |
| Goble, C., Wroe, C. and Stevens, R. | The myGrid project: services, architecture and demonstrator | 2003 | All Hands Meeting, pp. 595-603 | inproceedings | URL |
| Goderis, A. | Workflow re-use and discovery in bioinformatics | 2007 | School: Computer Science | phdthesis | |
| Goderis, A., Brooks, C., Altintas, I., Lee, E. and Goble, C. | Heterogeneous Composition of Models of Computation | 2008 | Future Generation Computer Systems | article | URL |
| Goderis, A., Brooks, C., Altintas, I., Lee, E. and Goble, C. | Composing Different Models of Computation in Kepler and Ptolemy II | 2007 | International Conference on Computational Science, pp. 182-190 | inproceedings | DOI |
| Goderis, A., De Roure, D., Goble, C., Bhagat, J., Cruickshank, D., Fisher, P., Michaelides, D. and Tanoh, F. | Discovering Scientific Workflows: The myExperiment Benchmarks | 2008 | unpublished | article | URL |
| Goderis, A., Fisher, P., Gibson, A., Tanoh, F., Wolstencroft, K., De Roure, D. and Goble, C. | Benchmarking Workflow Discovery: A Case Study | 2009 | Bioinformatics. Concurrency: Practice and Experience | article | URL |
| Goderis, A., Li, P. and Goble, C. | Workflow discovery: the problem, a case study from e-Science and a graph-based solution | 2006 | International Conference on Web Services, pp. 312-319 | inproceedings | DOI |
| Goderis, A., Lin, Y., Poschen, M., Procter, R., Goble, C., De Roure, D., Flanagan, B., Sytchev, I. and LeJeune, L. | The Open Scientist: fact or fiction? | 2009 | Pacific Symposium on Biocomputing, Open Science Workshop | inproceedings | |
| Goderis, A., Sattler, U. and Goble, C. | Applying descriptions logics for workflow reuse and repurposing | 2005 | International Description Logics Workshop | inproceedings | URL |
| Goderis, A., Sattler, U., Lord, P. and Goble, C. | Seven Bottlenecks to Workflow Reuse and Repurposing | 2005 | International Semantic Web Conference, pp. 323-337 | inproceedings | DOI |
| Gray, A., Groth, P., Loizou, A., Askjaer, S., Brenninkmeijer, C., Burger, K., Chichester, C., Evelo, C., Goble, C., Harland, L., Pettifer, S., Thompson, M., Waagmeester, A. and Williams, A. | Applying linked data approaches to pharmacology | 2013 | Semantic Web Vol. 5(3), pp. 1-13 | article | |
| Greenwood, M., Goble, C., Stevens, R., Zhao, J., Addis, M., Marvin, D., Moreau, L. and Oinn, T. | Provenance of e-Science Experiments - experience from Bioinformatics | 2003 | All Hands Meeting, pp. 223-226 | inproceedings | URL |
| Greenwood, M., Wroe, C., Stevens, R., Goble, C. and Addis, M. | Position Paper: Are Bioinformaticians doing e-Business? | 2002 | EuroWeb | inproceedings | URL |
| Harmelen, F., Kampis, G., Boerner, K., Besselaar, P., Schultes, E., Goble, C., Groth, P., Mons, B., Anderson, S., Decker, S., Hayes, C., Buecheler, T. and Helbing, D. | Theoretical and technological building blocks for an innovation accelerator | 2012 | The European Physical Journal Special Topics Vol. 214(1), pp. 183-214 | article | DOI URL |
| Herrgard, M.J., Swainston, N., Dobson, P., Dunn, W.B., Arga, Y.K., Arvas, M., Buthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M.L., Oliveira, A.P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasie, I., Weichart, D., Brent, R., Broomhead, D.S., Westerhoff, H.V., Kurdar, B., Penttila, M., Klipp, E., Palsson, B.O., Sauer, U., Oliver, S.G., Mendes, P., Nielsen, J. and Kell, D. | A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology | 2008 | Nat Biotech Vol. 26(10), pp. 1155-1160 | article | DOI URL |
| Hettne, K., Soiland-Reyes, S., Klyne, G., Belhajjame, K., Gamble, M., Bechhofer, S., Roos, M. and Corcho, O. | Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments | 2012 | Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, pp. 36-37 | inproceedings | DOI URL |
| Hosseini, M., Pettifer, S. and Georganas, N. | Visibility-based interest management in collaborative virtual environments | 2002 | International Conference on Collaborative Virtual Environments, pp. 143-144 | inproceedings | DOI |
| Hull, D., Pettifer, S. and Kell, D. | Defrosting the Digital Library: A Survey Of Bibliographic Tools For for The Next Generation Web | 2008 | Journal Of Computational Biology | article | |
| Hull, D., Stevens, R. and Lord, P. | Describing Web Services for user-oriented retrieval | 2005 | W3C Workshop on Frameworks for Semantics in Web Services | inproceedings | URL |
| Hull, D., Stevens, R., Lord, P., Wroe, C. and Goble, C. | Treating shimantic web syndrome with ontologies | 2004 | AKT Workshop on Semantic Web Services | inproceedings | |
| Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M., Li, P. and Oinn, T. | Taverna: a tool for building and running workflows of services. | 2006 | Nucleic Acids Research Vol. 34(Web Server issue), pp. 729-732 | article | URL |
| Iyengar, A. and De Roure, D. | Guest editors' introduction | 2003 | Knowledge and Data Engineering, IEEE Transactions on Vol. 15(4), pp. 769-770 | article | DOI |
| Jameson, D., Garwood, K., Garwood, C., Booth, T., Alper, P., Oliver, S. and Paton, N. | Data capture in bioinformatics: requirements and experiences with Pedro | 2008 | BMC Bioinformatics Vol. 9(1), pp. 183 | article | DOI |
| Jupp, S., Eales, J., Fischer, S., Land, S., Ramgolam, R., Williams, A. and Stevens, R. | Combining RapidMiner operators with bioinformatics services - a powerful combination | 2011 | RapidMiner Community Meeting and Conference, (RCOMM) | inproceedings | URL |
| Jupp, S., Horridge, M., Iannone, L., Klein, J., Owen, S., Schanstra, J., Stevens, R. and Wolstencroft, K. | Populous: A tool for populating ontology templates | 2010 | CoRR Vol. abs/1012.1745 | article | |
| Jupp, S., Horridge, M., Iannone, L., Klein, J., Owen, S., Schanstra, J., Wolstencroft, K. and Stevens, R. | Populous: a tool for building OWL ontologies from templates | 2012 | BMC Bioinformatics Vol. 13 | article | DOI |
| Jupp, S., Klein, J., Schanstra, J. and Stevens, R. | Developing a kidney and urinary pathway knowledge base | 2011 | Journal of biomedical semantic Vol. 2 Suppl 2:S7 | article | DOI |
| Kanapin, A., Apweiler, R., Biswas, M., Fleischmann, W., Karavidopoulou, Y., Kersey, P., Kriventseva, E.V., Mittard, V., Mulder, N., Oinn, T., Phan, I., Servant, F. and Zdobnov, E. | Interactive InterPro-based comparisons of proteins in whole genomes | 2002 | Bioinformatics Vol. 18(2), pp. 374-375 | article | DOI |
| Karasavvas, K., Wolstencroft, K., Mina, E., Cruickshank, D., Williams, A., De Roure, D., Goble, C. and Roos, M. | Opening new gateways to workflows for life scientists. | 2012 | Stud Health Technol Inform Vol. 175, pp. 131-141 | article | |
| Katayama, T., Arakawa, K., Nakao, M., Ono, K., Aoki-Kinoshita, K., Yamamoto, Y., Yamaguchi, A., Kawashima, S., Chun, H.-W., Aerts, J., Aranda, B., Barboza, L., Bonnal, R., Bruskiewich, R., Bryne, J., Fernandez, J., Funahashi, A., Gordon, P., Goto, N., Groscurth, A., Gutteridge, A., Holland, R., Kano, Y., Kawas, E., Kerhornou, A., Kibukawa, E., Kinjo, A., Kuhn, M., Lapp, H., Lehvaslaiho, H., Nakamura, H., Nakamura, Y., Nishizawa, T., Nobata, C., Noguchi, T., Oinn, T., Okamoto, S., Owen, S., Pafilis, E., Pocock, M., Prins, P., Ranzinger, R., Reisinger, F., Salwinski, L., Schreiber, M., Senger, M., Shigemoto, Y., Standley, D., Sugawara, H., Tashiro, T., Trelles, O., Vos, R., Wilkinson, M., York, W., Zmasek, C., Asai, K. and Takagi, T. | The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. | 2010 | Journal of Biomedical Semantics Vol. 1(1), pp. 8 | article | DOI URL |
| Kell, D. | Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells. | 2006 | FEBS Journal Vol. 273(5), pp. 873-894 | article | DOI |
| Klein, J., Jupp, S., Moulos, P., Fernandez, M., Buffin-Meyer, B., Casemayou, A., Chaaya, R., Charonis, A., Bascands, J.-L., Stevens, R. and Schanstra, J.P. | The KUPKB: a novel Web application to access multiomics data on kidney disease | 2012 | The FASEB Journal Vol. 26(5), pp. 2145-53 | article | DOI |
| Kotsiopoulos, I., Missier, P., Alper, P., Corcho, O., Bechhofer, S. and Goble, C. | Architectural Patterns for the Semantic Grid | 2007 | Knowledge and Data Management in GRIDs, pp. 119-134 | inbook | DOI |
| Lanzen, A., Grindhaug, S., Oinn, T. and Pal, P. | An Automatic Genome Annotation Pipeline | 2005 | Network Tools and Applications in Biology | inproceedings | |
| Lanzen, A. and Oinn, T. | The Taverna Interaction Service: enabling manual interaction in workflows. | 2008 | Bioinformatics Vol. 24(8), pp. 1118-1120 | article | DOI |
| Li, P., Brass, A., Pinney, J., Oinn, T., Kell, D. and Goble, C. | Taverna workflows for systems biology | 2006 | International Conference on Systems Biology | inproceedings | URL |
| Li, P., Castrillo, J., Velarde, G., Wassink, I., Soiland-Reyes, S., Owen, S., Withers, D., Oinn, T., Pocock, M., Goble, C., Oliver, S. and Kell, D. | Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data | 2008 | BMC Bioinformatics Vol. 9(334) | article | DOI |
| Li, P., Dada, J., Jameson, D., Spasic, I., Swainston, N., Carroll, K., Dunn, W., Khan, F., Malys, N., Messiha, H., Simeonidis, E., Weichart, D., Winder, C., Wishart, J., Broomhead, D., Goble, C., Gaskell, S., Kell, D., Westerhoff, H., Mendes, P. and Paton, N. | Systematic integration of experimental data and models in systems biology | 2010 | BMC Bioinformatics Vol. 11(1), pp. 582 | article | DOI URL |
| Li, P., Jennings, C., Owen, K., Oinn, T., Stevens, R., Pearce, S. and Wipat, A. | Association of variations in I kappa B-epsilon with Graves' disease using classical and myGrid methodologies | 2003 | All Hands Meeting | inproceedings | |
| Li, P., Oinn, T., Soiland, S. and Kell, D. | Automated manipulation of systems biology models using libSBML within Taverna workflows. | 2007 | Bioinformatics Vol. 24, pp. 287-289 | article | DOI |
| Lin, Y., Poschen, M., Procter, R., Voss, A., Goble, C., Bhagat, J., De Roure, D., Cruickshank, D. and Rouncefield, M. | Agile Management: Strategies for Developing a Social Networking Site for Scientists. | 2008 | International Conference on e-Social Science | inproceedings | URL |
| Lord, P., Alper, P., Wroe, C. and Goble, C. | Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery | 2005 | European Semantic Web Conference, pp. 17-31 | inproceedings | DOI |
| Lord, P., Alper, P., Wroe, C., Stevens, R., Goble, C., Zhao, J., Hull, D. and Greenwood, M. | The Semantic Web: Service discovery and provenance in myGrid | 2004 | W3C Workshop on Semantic Web for Life Sciences | inproceedings | URL |
| Lord, P., Bechhofer, S., Wilkinson, M., Schiltz, G., Gessler, D., Hull, D., Goble, C. and Stein, L. | Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt | 2004 | International Semantic Web Conference, pp. 350-364 | inproceedings | DOI |
| Lord, P., Reich, J., Mitchell, A., Stevens, R. and Goble, C. | PRECIS: an automated pipeline for producing concise reports about proteins | 2001 | IEEE International Symposium on Bioinformatics and Bioengineering, pp. 57-64 | inproceedings | DOI |
| Lord, P., Stevens, R., Brass, A. and Goble, C. | Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation | 2003 | Bioinformatics Vol. 19(10), pp. 1275-1283 | article | DOI |
| Lord, P., Stevens, R., Brass, A. and Goble, C. | Semantic similarity measures as tools for exploring the gene ontology | 2003 | Proceedings of Pacific Symposium on Biocomputing, pp. 601-612 | inproceedings | URL |
| Lord, P., Stevens, R., Butler, J. and McEntire, R. | The eighth annual bio-ontologies meeting. | 2005 | PLoS computational biology Vol. 1(7), pp. e77 | article | DOI |
| Lord, P., Wroe, C., Stevens, R., Goble, C., Miles, S., Moreau, L., Decker, K., Payne, T. and Papay, J. | Semantic and Personalised Service Discovery | 2003 | Workshop on Knowledge Grid and Grid Intelligence, pp. 100-107 | inproceedings | URL |
| Lord, P., Wroe, C., Stevens, R., Goble, C., Miles, S., Moreau, L., Decker, K., Payne, T. and Papay, J. | Semantic and Personalised Service Discovery | 2003 | All Hands Meeting | inproceedings | URL |
| Ludascher, B., Altintas, I., Bowers, S., Cummings, J., Critchlow, T., Deelman, E., De Roure, D., Freire, J., Goble, C., Jones, M., Kasky, S., McPhillips, T., Podhorszki, N., Silva, C., Taylor, I. and Mladen, V. | Scientific Data Management: Challenges, Technology, and Deployment | 2009 | inbook | URL | |
| Maheshwari, K., Missier, P., Goble, C. and Montagnat, J. | Medical Image Processing Workflow Support on the EGEE Grid with Taverna | 2009 | Intl Symposium on Computer Based Medical Systems (CBMS'09) | inproceedings | URL |
| Maheshwari, K., Montagnat, J. and Missier, P. | Extending Taverna to exploit EGEE Grid resources | 2008 | e-science | inproceedings | |
| Maleki-Dizaji, S., Rolfe, M., Fisher, P. and Holcombe, M. | A Systematic Approach to Understanding Bacterial Responses to Oxygen Using Taverna and Webservices | 2009 | Vol. 2313th International Conference on Biomedical Engineering | inproceedings | DOI URL |
| Marsh, J., Glencross, M., Pettifer, S. and Hubbold, R. | A Network Architecture Supporting Consistent Rich Behavior in Collaborative Interactive Applications | 2006 | Visualization and Computer Graphics, IEEE Transactions on Vol. 12(3), pp. 405-416 | article | DOI |
| Mcdermott, P. and Pettifer, S. | Extending Collaborative Tagging for Use With Scientific Data | 2009 | IADIS eSociety Conference Proceedings | inproceedings | URL |
| McDermott, P., Sinnott, J., Thorne, D., Pettifer, S. and Attwood, T. | An Architecture for Visualisation and Interactive Analysis of Proteins | 2006 | International Conference on Coordinated and Multiple Views in Exploratory Visualization, pp. 55-68 | inproceedings | DOI |
| Merelli, E., Armano, G., Cannata, N., Corradini, F., d'Inverno null, M., Doms, A., Lord, P., Martin, A., Milanesi, L., Moeller, S., Schroeder, M. and Luck, M. | Agents in bioinformatics, computational and systems biology. | 2007 | Briefings in Bioinformatics Vol. 8(1), pp. 45-59 | article | DOI |
| Missier, P., Alper, P., Corcho, O., Dunlop, I. and Goble, C. | Requirements and Services for Metadata Management | 2007 | Internet Computing, IEEE Vol. 11(5), pp. 17-25 | article | DOI |
| Missier, P., Belhajjame, K., Zhao, J. and Goble, C. | Data lineage model for Taverna workflows with lightweight annotation requirements | 2008 | International Provenance and Annotation Workshop | inproceedings | |
| Missier, P., Embury, S., Greenwood, M., Preece, A. and Jin, B. | Quality views: capturing and exploiting the user perspective on data quality | 2006 | International Conference on Very Large Data Bases, pp. 977-988 | inproceedings | |
| Missier, P., Embury, S., Hedeler, C., Greenwood, M., Pennock, J. and Brass, A. | Accelerating Disease Gene Identification Through Integrated SNP Data Analysis | 2007 | Data Integration in the Life Sciences - 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007. Proceedings, pp. 215-230 | inproceedings | DOI |
| Missier, P., Embury, S. and Stapenhurst, R. | Exploiting provenance to make sense of automated data acceptance decisions in scientific workflows | 2008 | International Provenance and Annotation Workshop | inproceedings | |
| Missier, P. and Goble, C. | Workflows to open provenance graphs, round-trip | 2011 | Future Generation Computer Systems Vol. 27(6), pp. 812 - 819 | article | DOI URL |
| Missier, P., Ludascher, B., Bowers, S., Dey, S., Sarkar, A., Shrestha, B., Altintas, I., Anand, M. and Goble, C. | Linking multiple workflow provenance traces for interoperable collaborative science | 2010 | Workflows in Support of Large-Scale Science (WORKS), 2010 5th Workshop on | inproceedings | DOI |
| Missier, P., Paton, N. and Belhajjame, K. | Fine-grained and efficient lineage querying of collection-based workflow provenance | 2010 | EDBT/ICDT 2010 Joint Conference | inproceedings | URL |
| Missier, P., Sahoo, S., Zhao, J., Goble, C. and Sheth, A. | Janus: from Workflows to Semantic Provenance and Linked Open Data | 2010 | IPAW-10 | inproceedings | URL |
| Missier, P., Soiland-Reyes, S., Owen, S., Tan, W., Nenadic, A., Dunlop, I., Williams, A., Oinn, T. and Goble, C. | Taverna, reloaded | 2010 | SSDBM 2010 | inproceedings | URL |
| Missier, P., Wolstencroft, K., Tanoh, F., Li, P., Bechhofer, S., Belhajjame, K. and Goble, C. | Functional Units: Abstractions for Web Service Annotations | 2010 | EEE 2010 Fourth International Workshop on Scientific Workflows SWF 2010 | inproceedings | |
| Missier, P., Wolstencroft, K., Tanoh, F., Li, P., Bechhofer, S., Belhajjame, K., Pettifer, S. and Goble, C. | Functional Units: Abstractions for Web Service Annotations | 2010 | 6th World Congress of Services, pp. 306-313 | inproceedings | DOI |
| Moeller, S., Krabbenhoeft, H., Tille, A., Paleino, D., Williams, A., Wolstencroft, K., Goble, C. and Plessy, C. | Community-driven computational biology with Debian and Taverna | 2010 | BOSC 2010 | inproceedings | |
| Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., Alpdemir, N., Cawley, R., De Roure, D., Ferris, J., Gaizauskas, R., Glover, K., Greenhalgh, C., Li, P., Liu, X., Lord, P., Luck, M., Marvin, D., Oinn, T., Paton, N., Pettifer, S., Radenkovic, M., Roberts, A., Robinson, A., Rodden, T., Senger, M., Sharman, N., Stevens, R., Warboys, B., Wipat, A. and Wroe, C. | On the Use of Agents in a BioInformatics Grid | 2003 | IEEE/ACM Workshop on Agent Based Cluster and Grid Computing, pp. 653-661 | inproceedings | DOI URL |
| Nenadic, A., Zhang, N., Cheetham, B. and Goble, C. | RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption | 2005 | Journal of Universal Computer Science Vol. 11(1), pp. 175-192 | article | URL |
| Nenadic, A., Zhang, N., Chin, J. and Goble, C. | FAME: Adding Multi-Level Authentication to Shibboleth | 2006 | IEEE International Conference on e-Science and Grid Computing, pp. 157 | inproceedings | DOI |
| Neudecker, C., Schlarb, S., Dogan, Z.M., Missier, P., Sufi, S., Williams, A. and Wolstencroft, K. | An experimental workflow development platform for historical document digitisation and analysis | 2011 | Proceedings of the 2011 Workshop on Historical Document Imaging and Processing - HIP 11, pp. 161 | inbook | DOI URL |
| Newman, D., Bechhofer, S. and De Roure, D. | myExperiment: An ontology for e-Research | 2009 | Workshop on Semantic Web Applications in Scientific Discourse in conjunction with the International Semantic Web Conference | inproceedings | URL |
| Oinn, T. | Talisman-rapid application development for the grid | 2003 | Bioinformatics Vol. 19, pp. i212-i214 | article | DOI |
| Oinn, T., Addis, M., Ferris, J., Marvin, D., Greenwood, M., Goble, C., Wipat, A., Li, P. and Carver, T. | Delivering web service coordination capability to users | 2004 | International World Wide Web Conference on Alternate track papers & posters, pp. 438-439 | inproceedings | DOI |
| Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, M., Wipat, A. and Li, P. | Taverna: a tool for the composition and enactment of bioinformatics workflows. | 2004 | Bioinformatics Vol. 20(17), pp. 3045-3054 | article | DOI |
| Oinn, T., Greenwood, M., Addis, M., Alpdemir, N., Ferris, J., Glover, K., Goble, C., Goderis, A., Hull, D., Marvin, D., Li, P., Lord, P., Pocock, M., Senger, M., Stevens, R., Wipat, A. and Wroe, C. | Taverna: lessons in creating a workflow environment for the life sciences | 2006 | Concurrency and Computation: Practice and Experience Vol. 18(10), pp. 1067-1100 | article | DOI |
| Oinn, T., Li, P., Kell, D., Goble, C., Goderis, A., Greenwood, M., Hull, D., Stevens, R., Turi, D. and Zhao, J. | Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community | 2006 | Workflows for e-Science, Scientific Workflows for Grids | inbook | |
| Page, K., Palma, R., Holubowicz, P., Klyne, G., Soiland-Reyes, S., Cruickshank, D., Cabero, R.G., Cuesta, E.G., Roure, D.D. and Zhao, J. | From workflows to Research Objects: an architecture for preserving the semantics of science | 2012 | Proceedings of the 2nd International Workshop on Linked Science | article | URL |
| Parastatidis, S. and Watson, P. | NEReSC Core Grid Middleware | 2003 | All Hands Meeting, pp. 549-556 | inproceedings | URL |
| Paton, N. | Managing and sharing experimental data: standards, tools and pitfalls. | 2008 | Biochemical Society Transactions Vol. 36(Pt 1), pp. 33-36 | article | DOI |
| Paton, N. | Automation Everywhere: Autonomics and Data Management | 2007 | British National Conference on Databases, pp. 3-12 | inproceedings | DOI |
| Paton, N. | Databases and the Grid: JDBC in WSDL, or Something Altogether Different? | 2004 | International Conference on Semantics of a Networked World, pp. 1-13 | inproceedings | DOI |
| Peim, M., Franconi, E., Paton, N. and Goble, C. | Query processing with description logic ontologies over object-wrapped databases | 2002 | International Conference on Scientific and Statistical Database Management, pp. 27-36 | inproceedings | DOI |
| Pettifer, S., Attwood, T. and Sinnott, J. | Integrated approaches for bioinformatics data analysis and visualisation - challenges, opportunities and new solutions | 2005 | Data Analysis and Visualization in Genomics and Proteomicssolutions, pp. 137-152 | inbook | |
| Pettifer, S., Attwood, T., Sinnott, J., Vass, N. and Corpas, M. | UTOPIA: User-friendly Tools for OPerating Informatics Applications | 2002 | All Hands Meeting | inproceedings | |
| Pettifer, S., Sinnott, J. and Attwood, T. | UTOPIA User-Friendly Tools for Operating Informatics Applications | 2004 | Comparative and Functional Genomics Vol. 5(1), pp. 55-60 | article | DOI |
| Pettifer, S., Thorne, D., McDermott, P., Attwood, T., Baran, J., Bryne, J.C., Hupponen, T., Mowbray, D. and Vriend, G. | An active registry for bioinformatics web services. | 2009 | Bioinformatics Vol. 25(16), pp. 2090-2091 | article | DOI URL |
| Pettifer, S., Thorne, D., McDermott, P., Marsh, J., Villéger, A., Kell, D.B. and Attwood, T.K. | Visualising biological data: a semantic approach to tool and database integration. | 2009 | BMC bioinformatics Vol. 10 Suppl 6 | article | DOI URL |
| Pettifer, S., Wolstencroft, K., Alper, P., Attwood, T., Coletta, A., Goble, C., Li, P., Mcdermott, P., Marsh, J., Oinn, T., Sinnott, J. and Thorne, D. | myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences | 2007 | Data Integration in the Life Sciences, pp. 59-70 | inproceedings | DOI |
| Pickles, S., Foster, M., MacLaren, J., Marsh, J. and Pettifer, S. | Grid-Enabled Desktop Environments: The GRENADE Project | 2003 | All Hands Meeting | inproceedings | URL |
| Pirro, G., Trunfio, P., Talia, D., Missier, P. and Goble, C. | ERGOT: A Semantic-based System for Service Discovery in Distributed Infrastructures | 2010 | Proc. of the 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing | inproceedings | |
| Preece, A., Missier, P., Embury, S., Jin, B. and Greenwood, M. | An ontology-based approach to handling information quality in e-Science | 2008 | Concurrency and Computation: Practice and Experience Vol. 20(3), pp. 253-264 | article | DOI |
| Reich, J., Mitchell, A., Goble, C. and Atwood, T. | Toward More Intelligent Annotation Tools: A Prototype | 2001 | Intelligent Systems, IEEE Vol. 16(6), pp. 42-51 | article | DOI |
| Rennie, C., Hulme, H., Fisher, P., Halp, L., Agaba, M., Noyes, H., Kemp, S. and Brass, A. | A Systematic, Data-driven Approach to the Combined Analysis of Microarray and QTL Data | 2008 | Developments in Biologicals Vol. 132, pp. 293-299 | article | |
| Roos, M., Marshall, S., Gibson, A. and Adriaans, P. | Structuring mined knowledge for the support of hypothesis generation in molecular biology | 2008 | SWAT4LS | inproceedings | URL |
| Rose, C., Turi, D., Williams, A., Wolstencroft, K. and Taylor, C. | Web Services for the DDSM and Digital Mammography Research | 2006 | International Workshop on Digital Mammography, pp. 376-383 | inproceedings | DOI |
| Roure, D. and Goble, C. | Supporting e-Science Using Semantic Web Technologies - The Semantic Grid | 2010 | Vol. 11Semantic e-Science, pp. 1-28 | incollection | DOI URL |
| Sabou, M., Wroe, C., Goble, C. and Mishne, G. | Learning domain ontologies for Web service descriptions: an experiment in bioinformatics | 2005 | International Conference on World Wide Web, pp. 190-198 | inproceedings | DOI |
| Sanchez-Gestido, M., Blanco-Abruna, L., Perez-Hernandez, M., Gonzalez-Cabero, R., Gomez-Perez, A. and Corcho, O. | Complex Data-Intensive Systems and Semantic Grid: Applications in Satellite Missions | 2006 | IEEE International Conference on e-Science and Grid Computing, pp. 158 | inproceedings | DOI |
| Sansone, S.-A., Rocca-Serra, P., Field, D., Maguire, E., Taylor, C., Hofmann, O., Fang, H., Neumann, S., Tong, W., Amaral-Zettler, L., Begley, K., Booth, T., Bougueleret, L., Burns, G., Chapman, B., Clark, T., Coleman, L.-A., Copeland, J., Das, S., de Daruvar, A., de Matos, P., Dix, I., Edmunds, S., Evelo, C.T., Forster, M.J., Gaudet, P., Gilbert, J., Goble, C., Griffin, J.L., Jacob, D., Kleinjans, J., Harland, L., Haug, K., Hermjakob, H., Sui, S.J.H., Laederach, A., Liang, S., Marshall, S., McGrath, A., Merrill, E., Reilly, D., Roux, M., Shamu, C.E., Shang, C.A., Steinbeck, C., Trefethen, A., Williams-Jones, B., Wolstencroft, K., Xenarios, I. and Hide, W. | Toward interoperable bioscience data | 2012 | Nat Genet Vol. 44(2), pp. 121-126 | article | URL |
| Senger, M., Oinn, T. and Rice, P. | Upcoming Standards for Data Analysis in Bioinformatics | 2006 | Grid Computing in Life Sciences, pp. 22-31 | inproceedings | |
| Senger, M., Rice, P. and Oinn, T. | Soaplab - a unified Sesame door to analysis tools | 2003 | All Hands Meeting | inproceedings | URL |
| Sharman, N., Alpdemir, N., Ferris, J., Greenwood, M., Li, P. and Wroe, C. | The myGrid Information Model | 2004 | All Hands Meeting | inproceedings | URL |
| Smith, J., Gounaris, A., Watson, P., Paton, N., Fernandes, A. and Sakellariou, R. | Distributed Query Processing on the Grid | 2002 | Grid Computing, pp. 279-290 | inproceedings | DOI |
| Spasic, I., Schober, D., Sansone, S.-A., Rebholz-Schuhmann, D., Kell, D. and Paton, N. | Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. | 2008 | BMC Bioinformatics Vol. 9 Suppl 5, pp. S5 | article | DOI |
| Sroka, J., Hidders, J., Missier, P. and Goble, C. | A formal semantics for the Taverna 2 workflow model | 2009 | Journal of Computer and System Sciences Vol. 76(6), pp. 490-508 | article | DOI URL |
| Stead, D., Paton, N., Missier, P., Embury, S., Hedeler, C., Jin, B., Brown, A. and Preece, A. | Information quality in proteomics | 2008 | Briefings in Bioinformatics Vol. 9(2), pp. 174-188 | article | DOI |
| Stevens, R., Aranguren, M., Wolstencroft, K., Sattler, U., Drummond, N., Horridge, M. and Rector, A. | Using OWL to model biological knowledge | 2007 | International Journal of Human-Computer Studies Vol. 65(7), pp. 583-594 | article | DOI |
| Stevens, R., Fisher, P., Zhao, J., Goble, C. and Brass, A. | Traversing the bioinformatics landscape | 2008 | Data Mining Techniques in Grid Computing Environments, pp. 141-164 | inbook | |
| Stevens, R., Glover, K., Greenhalgh, C., Jennings, C., Pearce, S., Li, P., Radenkovic, M. and Wipat, A. | Performing in silico experiments on the Grid: A Users Perspective | 2003 | All Hands Meeting, pp. 43-50 | inproceedings | URL |
| Stevens, R., Goble, C., Baker, P. and Brass, A. | A classification of tasks in bioinformatics | 2001 | Bioinformatics Vol. 17(2), pp. 180-188 | article | DOI |
| Stevens, R., Goble, C., Horrocks, I. and Bechhofer, S. | Building a bioinformatics ontology using OIL | 2002 | Information Technology in Biomedicine, IEEE Transactions on Vol. 6(2), pp. 135-141 | article | DOI |
| Stevens, R., Goble, C., Horrocks, I. and Bechhofer, S. | OILing the way to machine understandable bioinformatics resources | 2002 | Information Technology in Biomedicine, IEEE Transactions on Vol. 6(2), pp. 129-134 | article | DOI |
| Stevens, R., Goble, C., Paton, N., Bechhofer, S., Ng, G., Baker, P. and Brass, A. | Complex Query Formulation Over Diverse Information Sources in TAMBIS | 2003 | Bioinformatics: Managing Scientific Data | inbook | |
| Stevens, R., Horrocks, I., Goble, C. and Bechhofer, S. | Building a reason-able bioinformatics ontology using OIL | 2001 | IJCAI Workshop on Ontologies and Information Sharing | inproceedings | URL |
| Stevens, R. and Lord, P. | Application of ontologies in bioinformatics | 2008 | Handbook on Ontologies in Information Systems - second edition, pp. To be decided | inbook | |
| Stevens, R., Lord, P. and Gibson, A. | Something Nasty in the Woodshed: The Public Knowledge Model | 2006 | OWLED Workshop on OWL: Experiences and Directions | inproceedings | URL |
| Stevens, R., Lord, P. and Hull, D. | Using distributed data and tools in bioinformatics applications | 2007 | Bioinformatics: From Genomes to Therapies, pp. 1627-1649 | inbook | |
| Stevens, R., Mcentire, R., Goble, C., Greenwood, M., Zhao, J., Wipat, A. and Li, P. | myGrid and the drug discovery process | 2004 | Drug Discovery Today: BIOSILICO Vol. 2(4), pp. 140-148 | article | DOI |
| Stevens, R., Robinson, A. and Goble, C. | myGrid: personalised bioinformatics on the information grid. | 2003 | Bioinformatics Vol. 19 Suppl 1, pp. i302-4 | article | URL |
| Stevens, R., Tipney, H., Wroe, C., Oinn, T., Senger, M., Lord, P., Goble, C., Brass, A. and Tassabehji, M. | Exploring Williams-Beuren syndrome using myGrid | 2004 | Bioinformatics Vol. 20(1), pp. 303-310 | article | DOI |
| Stevens, R., Tipney, H., Wroe, C., Oinn, T., Senger, M., Lord, P., Goble, C., Brass, A. and Tassabehji, M. | Genome Science performed with e-Science Tools | 2004 | All Hands Meeting, pp. 768-775 | inproceedings | |
| Stevens, R., Wroe, C., Bechhofer, S., Lord, P., Rector, A. and Goble, C. | Building Ontologies in DAML + OIL | 2003 | Comparative and Functional Genomics Vol. 4(1), pp. 133-141 | article | DOI |
| Stevens, R., Wroe, C., Lord, P. and Goble, C. | Ontologies in bioinformatics | 2004 | Handbook on Ontologies, pp. 635-657 | inbook | |
| Stevens, R., Zhao, J. and Goble, C. | Using provenance to manage knowledge of In Silico experiments | 2007 | Briefings in Bioinformatics Vol. 8(3), pp. 183-194 | article | DOI |
| Stockinger, H., Attwood, T., Chohan, S.N.N., Côté, R., Cudré-Mauroux, P., Falquet, L., Fernandes, P., Finn, R.D.D., Hupponen, T., Korpelainen, E., Labarga, A., Laugraud, A., Lima, T., Pafilis, E., Pagni, M., Pettifer, S., Phan, I. and Rahman, N. | Experience using web services for biological sequence analysis. | 2008 | Briefings in bioinformatics | article | DOI URL |
| Sun, Y., Wipat, A., Pocock, M., Lee, P., Flanagan, K. and Worthington, J. | Exploring Microbial Genome Sequences to Identify Protein Families on the Grid | 2007 | IEEE Transactions onInformation Technology in Biomedicine Vol. 11(4)Information Technology in Biomedicine, IEEE Transactions on, pp. 435-442 | article | DOI |
| Sun, Y., Wipat, A., Pocock, M., Lee, P., Watson, P., Flanagan, K. and Worthington, J. | A grid-based system for microbial genome comparison and analysis | 2005 | IEEE International Symposium on Cluster Computing and the Grid, pp. 977-984 | inproceedings | URL |
| Swainston, N., Jameson, D., Li, P., Spasic, I., Mendes, P. and Paton, N. | Integrative Information Management for Systems Biology | 2010 | 7th International Conference on Data Integration in the Life Sciences (DILS 2010) | inproceedings | DOI |
| Swertz, M.A., Velde, K.J., Tesson, B.M., Scheltema, R.A., Arends, D., Vera, G., Alberts, R., Dijkstra, M., Schofield, P., Schughart, K., Hancock, J.M., Smedley, D., Wolstencroft, K., Goble, C., de Brock, E.O., Jones, A.R., Parkinson, H.E., members of the Coordination of Mouse Informatics Resources (CASIMIR). Genotype-To-Phenotype GEN2PHEN Consortiums and Jansen, R.C. | XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments | 2010 | Genome Biology Vol. 11 | article | DOI |
| Tan, W., Chard, K., Sulakhe, D., Madduri, R., Foster, I., Soiland-Reyes, S. and Goble, C. | Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach | 2009 | Proceedings of the 2009 IEEE International Conference on Web Services, pp. 413-420 | inproceedings | DOI |
| Tan, W., Madduri, R., Nenadic, A., Soiland-Reyes, S., Sulakhe, D., Foster, I. and Goble, C.A. | CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid | 2010 | BM Vol. 11, pp. 542 | article | DOI |
| Tan, W., Missier, P., Foster, I., Madduri, R., De Roure, D. and Goble, C. | A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid | 2010 | Concurrency and Computation: Practice and Experience Vol. 22(9), pp. 1098-1117 | article | DOI |
| Tan, W., Missier, P., Madduri, R. and Foster, I. | Building Scientific Workflow with Taverna and BPEL: A Comparative Study in caGrid | 2009 | Vol. 5472/2009Service-Oriented Computing - ICSOC 2008 Workshops, pp. 118-129 | inproceedings | DOI |
| Tan, W., Zhang, J., Madduri, R., Foster, I., De Roure, D. and Goble, C. | ServiceMap: Providing Map and GPS Assistance to Service Composition in Bioinformatics | 2011 | Services Computing (SCC), 2011 IEEE International Conference on, pp. 632-639 | inproceedings | DOI |
| Taylor, C., Paton, N., Garwood, K., Kirby, P., Stead, D., Yin, Z., Deutsch, E., Selway, L., Walker, J., Riba-Garcia, I., Mohammed, S., Deery, M., Howard, J., Dunkley, T., Aebersold, R., Kell, D., Lilley, K., Roepstorff, P., Yates, J., Brass, A., Brown, A., Cash Phillip, Gaskell, S., Hubbard, S. and Oliver, S. | A systematic approach to modeling, capturing, and disseminating proteomics experimental data | 2003 | Nature Biotechnology Vol. 21, pp. 247-254 | article | DOI |
| Turi, D., Missier, P., Goble, C., De Roure, D. and Oinn, T. | Taverna Workflows: Syntax and Semantics | 2007 | IEEE International Conference on e-Science and Grid Computing, pp. 441-448 | inproceedings | DOI |
| Vargas-Solar, G., Belhajjame, K., Castillo Contreras, E.E. and Peredo Márquez, K.J. | TERRA-ACQUA, Adaptable Definition and Execution of Workflows | 2003 | WISE '03: Proceedings of the Fourth International Conference on Web Information Systems Engineering, pp. 299 | inproceedings | |
| Walton, N., Witherick, D., Oinn, T. and Benson, K. | Taverna and Workflows in the Virtual Observatory | 2007 | Astronomical Data Analysis Software & Systems XVII | inproceedings | |
| Wassink, I., van der Vet, P.E., Wolstencroft, K., Neerincx, P.B.T., Roos, M., Rauwerda, H. and Breit, T. | Analysing scientific workflows: why workflows not only connect web services | 2009 | IEEE Congress on Services | inproceedings | |
| Williams, A.J., Harland, L., Groth, P., Pettifer, S., Chichester, C., Willighagen, E.L., Evelo, C.T., Blomberg, N., Ecker, G., Goble, C. and Mons, B. | Open PHACTS: semantic interoperability for drug discovery | 2012 | Drug Discovery Today Vol. 17(21–22), pp. 1188 - 1198 | article | DOI URL |
| Wipat, A., Sun, Y., Pocock, M., Lee, P., Watson, P. and Flanagan, K. | Developing Grid-based Systems for Microbial Genome Comparisons: The Microbase Project | 2004 | All Hands Meeting | inproceedings | URL |
| Wolstencroft, K., Alper, P., Hull, D., Wroe, C., Lord, P., Stevens, R. and Goble, C. | The myGrid ontology: bioinformatics service discovery | 2007 | International Journal of Bioinformatics Resesearch and Applications Vol. 3(3), pp. 303-325 | article | DOI |
| Wolstencroft, K., Brass, A., Horrocks, I., Lord, P., Sattler, U., Turi, D. and Stevens, R. | A Little Semantic Web Goes a Long Way in Biology | 2005 | International Semantic Web Conference, pp. 786-800 | inproceedings | DOI |
| Wolstencroft, K., Fisher, P., De Roure, D. and Goble, C. | Research In a Connected World | 2009 | inbook | URL | |
| Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., Nieva de la Hidalga, A., Balcazar Vargas, M.P., Sufi, S. and Goble, C. | The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud | 2013 | Nucleic Acids Research Vol. 41(W1), pp. W557-W561 | article | DOI URL |
| Wolstencroft, K., Lord, P., Tabernero, L., Brass, A. and Stevens, R. | Protein classification using ontology classification | 2006 | Bioinformatics Vol. 22(14), pp. 2530-e538 | article | DOI |
| Wolstencroft, K., Lord, P., Tabernero, L., Brass, A. and Stevens, R. | Using Ontology Reasoning to Classify Protein Phosphatases | 2005 | Bio-ontologies Meeting | inproceedings | |
| Wolstencroft, K., Mcentire, R., Stevens, R., Tabernero, L. and Brass, A. | Constructing ontology-driven protein family databases | 2005 | Bioinformatics Vol. 21(8), pp. 1685-1692 | article | DOI |
| Wolstencroft, K., Oinn, T., Goble, C., Ferris, J., Wroe, C., Lord, P., Glover, K. and Stevens, R. | Panoply of Utilities in Taverna | 2005 | First International Conference on e-Science and Grid Computing, pp. 156-162 | inproceedings | DOI |
| Wolstencroft, K., Owen, S., Horridge, M., Krebs, O., Mueller, W., Snoep, J.L., du Preez, F. and Goble, C. | RightField: embedding ontology annotation in spreadsheets | 2011 | Bioinformatics Vol. 27(14), pp. 2021-2022 | article | DOI URL |
| Wolstencroft, K., Owen, S., du Preez, F., Krebs, O., Mueller, W., Goble, C. and Snoep, J.L. | Chapter twenty-nine - The SEEK: A Platform for Sharing Data and Models in Systems Biology | 2011 | Vol. 500Methods in Systems Biology, pp. 629 - 655 | incollection | DOI URL |
| Wolstencroft, K., Stevens, R. and Haarsley, V. | Applying OWL Reasoning to Genomics: A Case Study | 2007 | Semantic Web: Revolutionising Knowledge Discovery in Life Sciences | inbook | |
| Wolstencroft, K., Stevens, R., Tabernero, L. and Brass, A. | PhosphaBase: an ontology-driven database resource for protein phosphatases. | 2005 | Proteins Vol. 58(2), pp. 290-294 | article | DOI |
| Wroe, C., Cimino, J. and Rector, A. | Integrating Existing Drug Formulation Terminologies Into an HL7 Standard Classification using OpenGALEN | 2001 | Annual Fall Symposium of American Medical Informatics Association | inproceedings | |
| Wroe, C., Goble, C., Goderis, A., Lord, P., Miles, S., Papay, J., Alper, P. and Moreau, L. | Recycling workflows and services through discovery and reuse: Research Articles | 2007 | Concurrency and Computation: Practice and Experience Vol. 19(2), pp. 181-194 | article | DOI |
| Wroe, C., Goble, C., Greenwood, M., Lord, P., Miles, S., Papay, J., Payne, T. and Moreau, L. | Automating experiments using semantic data in a bioinformatics grid | 2004 | Intelligent Systems, IEEE Vol. 19(1), pp. 48-55 | article | DOI |
| Wroe, C., Lord, P., Miles, S., Papay, J., Moreau, L. and Goble, C. | Recycling Services and Workflows through Discovery and Reuse | 2004 | All Hands Meeting | inproceedings | URL |
| Wroe, C. and Stevens, R. | Ontologies for molecular biology | 2007 | Bioinformatics: From Genomes to Therapies, pp. 1061-1085 | inbook | |
| Wroe, C., Stevens, R., Goble, C. and Ashburner, M. | A methodology to migrate the gene ontology to a description logic environment using daml+oil | 2003 | Pacific Symposium on Biocomputing, pp. 624-635 | inproceedings | URL |
| Wroe, C., Stevens, R., Goble, C., Roberts, A. and Greenwood, M. | A suite of DAML+ OIL ontologies to describe bioinformatics web services and data | 2003 | International Journal of Cooperative Information Systems Vol. 12, pp. 197-224 | article | DOI |
| Xing, W., Corcho, O., Goble, C. and Dikaiakos, M. | Information Quality Evaluation for Grid Information Services | 2007 | CoreGRID Symposium, pp. 165-174 | inproceedings | DOI |
| Xing, W., Corcho, O., Goble, C. and Dikaiakos, M. | An ActOn-based semantic information service for EGEE | 2007 | IEEE/ACM International Conference on Grid Computing, pp. 81-88 | inproceedings | DOI |
| Yesilada, Y., Bechhofer, S. and Horan, B. | Dynamic Linking of Web Resources: Customisation and Personalisation | 2008 | Advances in Semantic Media Adaptation and PersonalizationDynamic Linking of Web Resources: Customisation and Personalisation, pp. 1-24 | inbook | DOI URL |
| Yesilada, Y., Stevens, R., Goble, C. and Hussein, S. | Rendering tables in audio: the interaction of structure and reading styles | 2004 | ACM SIGACCESS Accessibility and Computing Vol. 77-78, pp. 16-23 | article | DOI |
| Yu, Q. | BioBay: Shopping for Services in the Life Sciences | 2006 | School: Computer Science, University of Manchester | mastersthesis | URL |
| Zhang, H., Soiland-Reyes, S. and Goble, C. | Taverna Mobile: Taverna workflows on Android | 2013 | EMBnet.journal Vol. 19(B) | article | URL |
| Zhang, N., Yao, L., Chin, J., Shi, Q., Nenadic, A., Mcnab, A., Rector, A. and Goble, C. | Plugging a scalable authentication framework into Shibboleth | 2005 | IEEE International Workshops on Enabling Technologies: Infrastructure for Collaborative Enterprise, pp. 271-276 | inproceedings | DOI |
| Zhang, N., Yao, L., Nenadic, A., Chin, J., Goble, C., Rector, A., Chadwick, D., Otenko, S. and Shi, Q. | Achieving fine-grained access control in virtual organizations: Research Articles | 2007 | Concurrency and Computation: Practice and Experience Vol. 19(9), pp. 1333-1352 | article | DOI |
| Zhao, J. | A conceptual model for e-science provenance | 2007 | School: Computer Science, University of Manchester | phdthesis | |
| Zhao, J., Goble, C., Greenwood, M., Wroe, C. and Stevens, R. | Annotating, linking and browsing provenance logs for e-Science | 2003 | International Semantic Web Conference | inproceedings | DOI |
| Zhao, J., Goble, C. and Stevens, R. | An Identity Crisis in the Life Sciences | 2006 | International Provenance and Annotation Workshop, pp. 254-269 | inproceedings | DOI |
| Zhao, J., Goble, C. and Stevens, R. | Semantic web applications to e-science in silico experiments | 2004 | International World Wide Web Conference, pp. 284-285 | inproceedings | DOI |
| Zhao, J., Goble, C., Stevens, R. and Bechhofer, S. | Semantically Linking and Browsing Provenance Logs for E-science | 2004 | International IFIP Conference on Semantics of a Networked World, pp. 158-176 | inproceedings | DOI |
| Zhao, J., Goble, C., Stevens, R. and Turi, D. | Mining Taverna's semantic web of provenance | 2008 | Concurrency and Computation: Practice and Experience Vol. 20(5), pp. 463-472 | article | DOI |
| Zhao, J., Klyne, G., Holubowicz, P., Palma, R., Soiland-Reyes, S., Hettne, K., Ruiz, J.E., Roos, M., Page, K. and Gómez-Pérez, J.M. | RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences | 2012 | Proc. 2nd Intl. Workshop on Linked Scienc | article | |
| Zhao, J., Lord, P., Alper, P., Wroe, C. and Goble, C. | The implications of Semantic Web technologies for support of the e-Science process | 2005 | All Hands Meeting | inproceedings | URL |
| Zhao, J., Sahoo, S., Missier, P., Sheth, A. and Goble, C. | Extending Semantic Provenance into the Web of Data | 2011 | Internet Computing, IEEE Vol. 15(1), pp. 40-48 | article | DOI |
| Zhao, J., Stevens, R., Wroe, C., Greenwood, M. and Goble, C. | The Origin and History of in silico Experiments | 2004 | All Hands Meeting | inproceedings | URL |
| Zhao, J., Wroe, C., Goble, C., Stevens, R., Quan, D. and Greenwood, M. | Using Semantic Web Technologies for Representing E-science Provenance | 2004 | International Semantic Web Conference, pp. 92-106 | inproceedings | DOI |
| Zhou, J., Dialani, V., De Roure, D. and Hall, W. | A Distance-based Semantic Search Algorithm for Peer-to-Peer Open Hypermedia Systems | 2003 | International Conference on Parallel and Distributed Computing, Applications and Technologies, pp. 7-11 | inproceedings | URL |
| Zhou, J., Hall, W. and De Roure, D. | When Open Hypermedia Meets Peer-to-Peer Computing | 2004 | ACM Conference on Hypertext and Hypermedia, pp. 266-267 | inproceedings | URL |
| The Semantic Web: Research and Applications | 2008 | proceedings | DOI |